Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LG374_RS01005 Genome accession   NZ_OU745373
Coordinates   203473..204969 (+) Length   498 a.a.
NCBI ID   WP_225755957.1    Uniprot ID   -
Organism   Cardiobacterium sp. Marseille-Q4385     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 198473..209969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG374_RS00990 - 199815..201455 (+) 1641 WP_225755954.1 FAD-dependent oxidoreductase -
  LG374_RS00995 queA 201925..202965 (+) 1041 WP_225755955.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  LG374_RS01000 ybaK 202984..203463 (+) 480 WP_225755956.1 Cys-tRNA(Pro) deacylase -
  LG374_RS01005 comM 203473..204969 (+) 1497 WP_225755957.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LG374_RS01010 recF 204966..206042 (+) 1077 WP_225755958.1 DNA replication/repair protein RecF -
  LG374_RS01015 - 206189..206805 (+) 617 Protein_200 IS1595 family transposase -
  LG374_RS01020 - 207001..207861 (-) 861 WP_225755959.1 hypothetical protein -
  LG374_RS01025 ppk2 208392..209552 (-) 1161 WP_225755960.1 polyphosphate kinase 2 -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 54042.80 Da        Isoelectric Point: 7.9791

>NTDB_id=1151531 LG374_RS01005 WP_225755957.1 203473..204969(+) (comM) [Cardiobacterium sp. Marseille-Q4385]
MTLATVYTRAPLSMHAPLVRVEVHLAGGLPAMTLVGLPEKAVKESKDRVRAAIINSGFEFPSKHITINLAPAELPKDGAR
YDLAIALGILIASDQLPADDIAQYEFHGELALSGALRPVGGILPCALAATDAHRRIITAPDNHHEAALVAAENVHSAESL
AEIAAVLHRRQDWPPPPPPPIRPPRSYPDYADVIGQHQAKRALLVAASGGHHVLMSGPPGTGKSMLAQRFPGILPPMDER
EAIESAAVRSLAGSFSPADWRIRPYRAPHHSSSSSALVGGGTIPRPGEISLAHHGVLFLDELPEYDRRVLEMLREPLENG
HITISRAAMKSDFPARFQLIAAMNPCPCGYHGDPERACSDTPDQIARYRQKISGPLLDRIDIHLTVARLTPAQLREQQQA
HPETSADLRAQSTAARRIQLERQGRPNAALNGSLLERHLHAEADVLPLLDRAAERMHLSMRSYQRILKVARSIADLAASP
TVSRQHLAEALQYRGGSV

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1151531 LG374_RS01005 WP_225755957.1 203473..204969(+) (comM) [Cardiobacterium sp. Marseille-Q4385]
ATGACCCTCGCCACCGTTTACACCCGCGCCCCCCTCAGCATGCACGCGCCGCTGGTGCGCGTCGAAGTCCACCTCGCGGG
CGGCCTGCCGGCCATGACCCTGGTCGGCCTGCCGGAAAAAGCCGTCAAAGAAAGCAAAGACCGCGTCCGTGCCGCCATCA
TCAACAGCGGCTTCGAATTCCCCTCCAAACACATCACCATCAACCTCGCCCCGGCGGAACTGCCGAAAGATGGCGCCAGA
TACGACCTCGCCATCGCCCTCGGCATCCTCATCGCTTCCGACCAACTGCCCGCCGACGACATCGCCCAATACGAATTTCA
CGGCGAACTCGCCCTCAGCGGCGCACTGCGCCCCGTCGGCGGCATCCTGCCCTGCGCACTCGCCGCCACGGACGCGCACC
GCCGCATCATCACCGCGCCGGACAACCACCACGAAGCCGCGCTCGTCGCCGCCGAAAACGTCCACAGCGCGGAAAGCCTC
GCCGAAATCGCCGCCGTCCTGCACCGCCGCCAGGACTGGCCACCGCCACCACCACCGCCCATCCGCCCGCCGCGCAGCTA
TCCCGATTACGCCGACGTCATCGGCCAGCACCAAGCCAAACGCGCCCTGCTCGTCGCCGCCAGCGGCGGCCACCACGTCC
TGATGAGCGGCCCGCCCGGCACCGGCAAATCCATGCTGGCGCAACGCTTCCCCGGCATCCTACCGCCGATGGACGAACGC
GAAGCCATCGAAAGCGCCGCCGTGCGCTCGCTGGCGGGCAGCTTCAGCCCCGCCGACTGGCGTATCCGCCCCTACCGCGC
CCCGCACCACAGCAGCTCATCCAGCGCCCTCGTCGGCGGTGGCACCATCCCCCGTCCTGGCGAAATCAGCCTCGCCCACC
ACGGCGTCCTTTTCTTGGACGAACTGCCCGAATACGACCGCCGCGTCCTCGAAATGCTGCGCGAACCGCTGGAAAACGGC
CACATCACCATCAGCCGCGCCGCGATGAAAAGCGACTTCCCCGCCCGCTTCCAGCTCATCGCTGCCATGAACCCCTGCCC
CTGCGGCTACCACGGCGACCCCGAACGCGCCTGCAGCGACACCCCCGACCAAATCGCGCGCTACCGCCAGAAAATCTCCG
GCCCGCTGCTCGACCGTATCGACATCCACCTCACCGTCGCCCGCCTCACCCCGGCACAACTGCGCGAACAACAACAAGCC
CACCCCGAAACCAGCGCCGACCTGCGCGCCCAAAGCACTGCCGCGCGCCGCATCCAGCTCGAACGCCAGGGACGGCCCAA
CGCCGCCCTTAACGGCAGCCTGCTGGAACGCCACCTGCACGCCGAAGCGGACGTATTGCCGCTCCTCGACCGCGCCGCCG
AACGCATGCACCTCTCCATGCGCAGCTACCAGCGCATCCTCAAAGTCGCGCGCAGCATCGCCGACCTCGCCGCCAGCCCA
ACCGTGAGCCGCCAACACCTCGCCGAAGCCCTGCAATACCGGGGCGGCAGCGTATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.4

100

0.516
  comM Vibrio campbellii strain DS40M4

51.308

99.799

0.512
  comM Haemophilus influenzae Rd KW20

50.499

100

0.508
  comM Legionella pneumophila str. Paris

49.798

99.598

0.496
  comM Legionella pneumophila strain ERS1305867

49.798

99.598

0.496
  comM Glaesserella parasuis strain SC1401

48.902

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.44

Multiple sequence alignment