Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LDO33_RS17655 Genome accession   NZ_OU594967
Coordinates   3839841..3841364 (+) Length   507 a.a.
NCBI ID   WP_131911258.1    Uniprot ID   -
Organism   Celerinatantimonas diazotrophica isolate CEDIAZO1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3834841..3846364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO33_RS17630 (CEDIAZO_03544) - 3834929..3835534 (+) 606 WP_131911253.1 sel1 repeat family protein -
  LDO33_RS17635 (CEDIAZO_03545) - 3835534..3835860 (+) 327 WP_165872628.1 hypothetical protein -
  LDO33_RS17640 (CEDIAZO_03546) - 3835912..3836886 (+) 975 WP_131911255.1 sel1 repeat family protein -
  LDO33_RS17645 (CEDIAZO_03547) - 3837103..3838134 (-) 1032 WP_131911256.1 SUMF1/EgtB/PvdO family nonheme iron enzyme -
  LDO33_RS17650 (CEDIAZO_03548) - 3838439..3839422 (+) 984 WP_131911257.1 sel1 repeat family protein -
  LDO33_RS17655 (CEDIAZO_03549) comM 3839841..3841364 (+) 1524 WP_131911258.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LDO33_RS17660 (CEDIAZO_03550) - 3841365..3842057 (-) 693 WP_131911259.1 GntR family transcriptional regulator -
  LDO33_RS17665 (CEDIAZO_03551) ilvG 3842898..3844550 (+) 1653 WP_131911260.1 acetolactate synthase 2 catalytic subunit -
  LDO33_RS17670 (CEDIAZO_03552) ilvM 3844547..3844804 (+) 258 WP_131911261.1 acetolactate synthase 2 small subunit -
  LDO33_RS17675 (CEDIAZO_03553) - 3844816..3845742 (+) 927 WP_131911262.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54602.68 Da        Isoelectric Point: 7.0214

>NTDB_id=1151334 LDO33_RS17655 WP_131911258.1 3839841..3841364(+) (comM) [Celerinatantimonas diazotrophica isolate CEDIAZO1]
MEKLAVVYSRASIGLDAPLVTVETHLANGIPAFTLVGLPEASVREARERVRSALLTSGFEFPAARITVNLAPADLPKEGG
RFDLAIAIGILVASAQLPEAPLQQLELLGELALSGEIRHIPGAISASMAAVKAQHKLILPPADAGSAARVEQAQIYAPAS
LGELVAWLNGQQSLALTKADELPQPTQVPSTGDFRDVIGQNSAKRALLIAAAARHNLLMLGPPGTGKTMLASRLPGILPP
LNTHQAIDVAAIESLGGNERALSHWYTPPFRSPHHSASAVALVGGGSKPRPGEISLAHHGVLFLDEMAEFPRAVLDALRQ
PLESGMVHISRAMQQVTFPADFQLIGALNPSPSGYYQGHQARSNVDQILRYLSRLSGPFLDRFDLSVEVTSLPRGSLNQE
PKGLSTEELREQVIQARERQLKRQGCLNSELSGAMLREIAPLNNTEASFLEQAIEKLGLSIRAYHRIWKVALTISDLNQQ
PLEHAQLVEALGYRAMDRLLNRLTQTV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1151334 LDO33_RS17655 WP_131911258.1 3839841..3841364(+) (comM) [Celerinatantimonas diazotrophica isolate CEDIAZO1]
ATGGAAAAACTAGCTGTGGTTTATTCTCGGGCATCCATTGGCCTCGATGCACCACTGGTAACGGTAGAGACGCATCTGGC
CAATGGCATTCCAGCTTTTACCTTGGTTGGGCTGCCTGAAGCATCGGTACGCGAAGCACGAGAACGGGTTCGCAGCGCCC
TGCTCACCAGCGGCTTTGAATTCCCGGCTGCCCGAATCACCGTCAATCTAGCTCCAGCAGATCTGCCTAAAGAAGGTGGT
CGTTTTGATCTGGCGATCGCGATTGGCATTTTGGTTGCGTCAGCTCAATTGCCGGAAGCCCCACTACAGCAGCTTGAATT
ACTCGGTGAATTGGCACTATCGGGGGAAATTCGCCATATTCCCGGGGCCATTAGTGCATCAATGGCCGCGGTGAAAGCTC
AGCACAAATTGATTTTACCGCCAGCGGATGCGGGCTCTGCTGCACGTGTTGAACAAGCGCAAATTTATGCTCCGGCCAGT
CTTGGCGAATTGGTCGCTTGGCTTAATGGTCAACAATCATTAGCTCTGACAAAAGCAGATGAACTTCCCCAACCCACACA
GGTACCCAGTACAGGTGACTTTCGTGATGTCATCGGTCAAAACAGCGCAAAACGCGCGTTGTTAATTGCCGCTGCCGCTC
GGCATAATCTGTTAATGCTTGGCCCTCCGGGAACTGGAAAAACCATGCTTGCAAGCCGTTTACCAGGTATTTTACCGCCC
CTAAATACTCATCAAGCTATTGATGTAGCGGCCATCGAATCACTTGGAGGGAATGAGCGAGCATTAAGTCACTGGTATAC
ACCGCCGTTTCGCAGCCCTCATCACAGTGCCTCGGCGGTGGCATTAGTCGGTGGTGGCAGCAAACCCCGTCCGGGTGAAA
TCTCGCTCGCCCATCATGGTGTCTTGTTCTTAGATGAAATGGCCGAGTTTCCACGTGCAGTGCTCGATGCCCTGCGCCAA
CCGCTTGAGTCAGGGATGGTGCATATTTCCAGAGCCATGCAACAGGTCACCTTTCCGGCCGACTTTCAACTCATTGGTGC
TCTCAACCCTAGTCCCAGCGGTTACTATCAAGGACATCAAGCACGCAGTAATGTCGACCAAATCTTGCGCTATCTTAGCC
GTCTCTCGGGACCTTTTTTAGATCGATTTGATTTAAGTGTTGAGGTTACCAGCTTGCCCCGCGGTAGCCTCAATCAAGAG
CCTAAAGGGCTCAGCACTGAAGAGCTGCGAGAACAGGTGATCCAAGCCAGAGAACGGCAACTCAAACGTCAGGGGTGTTT
AAATAGCGAACTCAGTGGTGCGATGCTACGAGAAATTGCGCCATTAAATAATACCGAAGCAAGCTTTTTAGAGCAGGCCA
TCGAAAAACTTGGATTATCGATCCGTGCTTATCATCGGATCTGGAAAGTTGCATTAACGATCAGTGATCTAAACCAACAA
CCACTTGAGCATGCTCAACTTGTCGAGGCGCTCGGCTATCGAGCCATGGATCGGTTACTGAATCGCCTCACACAAACGGT
GTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-393)

Subunit ChlI of Mg-chelatase (ChlI)

(22-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.455

99.211

0.57
  comM Haemophilus influenzae Rd KW20

56.41

100

0.564
  comM Glaesserella parasuis strain SC1401

56.324

99.803

0.562
  comM Vibrio campbellii strain DS40M4

56.151

99.408

0.558
  comM Legionella pneumophila str. Paris

46.2

98.619

0.456
  comM Legionella pneumophila strain ERS1305867

46.2

98.619

0.456
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.584

99.606

0.414

Multiple sequence alignment