Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KOD61_RS12445 Genome accession   NZ_OU015430
Coordinates   2644681..2646195 (+) Length   504 a.a.
NCBI ID   WP_215218962.1    Uniprot ID   -
Organism   Novilysobacter luteus strain CECT 30171     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2639681..2651195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOD61_RS12420 (LYB30171_02481) - 2639917..2640786 (-) 870 WP_251370597.1 NAD(P)-dependent oxidoreductase -
  KOD61_RS12425 (LYB30171_02482) speA 2640903..2642792 (-) 1890 WP_215218958.1 arginine decarboxylase -
  KOD61_RS12430 (LYB30171_02483) speE 2642968..2643819 (+) 852 WP_215218959.1 polyamine aminopropyltransferase -
  KOD61_RS12435 (LYB30171_02484) - 2643840..2644178 (-) 339 WP_215218960.1 P-II family nitrogen regulator -
  KOD61_RS12440 (LYB30171_02485) ubiK 2644378..2644671 (+) 294 WP_215218961.1 ubiquinone biosynthesis accessory factor UbiK -
  KOD61_RS12445 (LYB30171_02486) comM 2644681..2646195 (+) 1515 WP_215218962.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KOD61_RS12450 (LYB30171_02487) - 2646201..2646662 (-) 462 WP_215218963.1 hypothetical protein -
  KOD61_RS12455 (LYB30171_02488) - 2646753..2647928 (-) 1176 WP_215218964.1 putative peptide maturation dehydrogenase -
  KOD61_RS12460 (LYB30171_02489) - 2648087..2648419 (+) 333 WP_215218965.1 NHLP-related RiPP peptide -
  KOD61_RS12465 (LYB30171_02490) - 2648371..2650998 (-) 2628 WP_215218966.1 putative peptide modification system cyclase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53441.19 Da        Isoelectric Point: 8.5180

>NTDB_id=1151003 KOD61_RS12445 WP_215218962.1 2644681..2646195(+) (comM) [Novilysobacter luteus strain CECT 30171]
MNLALVHSRARTGVRAPEVRVEVHLGGGLPTMSIVGLPEAAVREAKDRVRAAMQCAQFEFPQRRITVNLAPADLPKGGGR
FDLPIALGILAASGQIPLQALGEYEFLGELGLTGELRVVDGVLPAALAAADAGRKLIVPAGNGAEAALASQVEAYTARTL
LEVCAMLTGSKTLPAAVAPARTRTPGADLRDVRGQAHARRALEVAAAGGHHLLLIGPPGCGKSLLASRLPGLLPDASEEE
ALESAAIASISGRGLDPASWLARPFRAPHHTASAVALVGGGADPRPGEISLAHHGVLFLDELPEWERRALEVLREPLESG
VVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCTCSPDAVRRYRGRVSGPLMDRIDLHVEVPRLPPSELRPDAPD
GEPSEDVRRRVLHARRLQDTRAGKPNARLSQAETNATCRLSNGDHALLERAVEQLQLSARSMHRILRVARTVADLADSPQ
IRTSHLSEAIGYRRLDRTPAPAIA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1151003 KOD61_RS12445 WP_215218962.1 2644681..2646195(+) (comM) [Novilysobacter luteus strain CECT 30171]
GTGAACCTGGCACTCGTGCACAGTCGTGCACGGACGGGCGTGCGTGCGCCCGAAGTGAGGGTCGAGGTGCACCTCGGCGG
CGGACTGCCGACGATGTCGATCGTCGGCCTGCCCGAGGCCGCCGTCCGCGAAGCCAAGGACCGCGTGCGCGCGGCGATGC
AGTGCGCGCAGTTCGAGTTCCCGCAGCGCCGCATCACCGTCAACCTTGCACCGGCGGACCTGCCCAAGGGCGGTGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTCGCCGCGAGTGGACAGATCCCGTTGCAGGCGCTGGGCGAGTACGAGTTCCT
CGGCGAGCTCGGGCTGACCGGTGAGCTGCGCGTCGTCGACGGCGTGCTGCCGGCAGCACTGGCGGCCGCCGACGCCGGGC
GCAAGCTGATCGTGCCGGCCGGCAACGGAGCCGAGGCGGCGCTGGCCAGCCAGGTCGAGGCCTACACCGCGCGGACCCTG
CTGGAGGTCTGCGCGATGCTGACCGGCAGCAAGACGCTACCCGCAGCGGTCGCCCCGGCCCGCACGCGGACGCCCGGCGC
CGACCTGCGCGACGTCCGCGGCCAGGCGCATGCGCGCCGCGCGCTGGAGGTCGCCGCCGCCGGAGGCCACCACCTGCTGC
TGATCGGTCCACCGGGGTGCGGCAAGAGCCTGCTGGCCTCGCGCCTGCCTGGCCTGCTGCCGGATGCCAGCGAGGAGGAG
GCGCTGGAATCGGCCGCCATCGCCTCGATCAGCGGGCGTGGCCTGGATCCGGCCAGTTGGCTGGCGCGGCCGTTCCGCGC
GCCCCACCACACCGCCAGCGCGGTGGCCCTGGTGGGTGGCGGCGCCGACCCGCGCCCCGGCGAGATCTCACTGGCCCACC
ACGGTGTGCTCTTCCTCGACGAGCTGCCCGAGTGGGAGCGCCGTGCACTGGAGGTGTTGCGTGAGCCGCTGGAGTCCGGC
GTCGTGACCGTCTCTCGGGCCGCCCGCAGCGCGGAGTTCCCGGCCCGCTTCCAGCTGGTCGCGGCCATGAACCCCTGCCC
CTGCGGCTGGGCCGGCGATCCCAGTGGGCGCTGCACCTGCAGTCCCGATGCCGTGAGGCGCTACCGCGGCCGTGTATCCG
GCCCGTTGATGGACCGGATCGACCTGCACGTGGAGGTGCCGCGCCTGCCGCCGTCCGAGCTGCGGCCCGATGCACCCGAC
GGCGAGCCGAGCGAGGACGTGCGCCGCCGCGTGCTCCATGCCCGCAGGCTGCAGGACACCCGTGCCGGCAAGCCCAATGC
CCGGCTGAGCCAGGCCGAAACCAACGCCACCTGCCGGTTGTCGAACGGTGACCACGCGTTGCTCGAACGCGCTGTCGAGC
AACTGCAGCTGTCGGCGCGGTCGATGCACCGCATCCTGCGGGTGGCGCGGACGGTCGCCGACCTGGCCGACAGCCCGCAG
ATCCGCACGTCGCACCTGAGCGAGGCGATCGGCTACCGCCGTCTGGATCGCACCCCCGCGCCGGCGATAGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.076

99.802

0.54
  comM Vibrio campbellii strain DS40M4

54.509

99.008

0.54
  comM Haemophilus influenzae Rd KW20

53.678

99.802

0.536
  comM Glaesserella parasuis strain SC1401

53.28

99.802

0.532
  comM Legionella pneumophila str. Paris

50

98.81

0.494
  comM Legionella pneumophila strain ERS1305867

50

98.81

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.472

100

0.458

Multiple sequence alignment