Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | KOD61_RS03885 | Genome accession | NZ_OU015430 |
| Coordinates | 837075..838256 (+) | Length | 393 a.a. |
| NCBI ID | WP_215219745.1 | Uniprot ID | - |
| Organism | Novilysobacter luteus strain CECT 30171 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 832075..843256
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KOD61_RS03855 (LYB30171_00778) | - | 832305..832685 (+) | 381 | WP_215219739.1 | PA2779 family protein | - |
| KOD61_RS03860 (LYB30171_00779) | - | 832730..833692 (+) | 963 | WP_215219740.1 | PA2778 family cysteine peptidase | - |
| KOD61_RS03865 (LYB30171_00780) | - | 833696..834172 (-) | 477 | WP_215219741.1 | DUF4426 domain-containing protein | - |
| KOD61_RS03870 (LYB30171_00781) | proC | 834182..835024 (-) | 843 | WP_215219742.1 | pyrroline-5-carboxylate reductase | - |
| KOD61_RS03875 (LYB30171_00782) | - | 835088..835771 (-) | 684 | WP_215219743.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| KOD61_RS03880 (LYB30171_00783) | pilT | 835980..837017 (+) | 1038 | WP_215219744.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| KOD61_RS03885 (LYB30171_00784) | pilU | 837075..838256 (+) | 1182 | WP_215219745.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| KOD61_RS03890 (LYB30171_00785) | - | 838264..839202 (-) | 939 | WP_215219746.1 | DUF72 domain-containing protein | - |
| KOD61_RS03895 (LYB30171_00786) | - | 839245..841005 (-) | 1761 | WP_215219747.1 | dipeptidyl-peptidase 3 family protein | - |
| KOD61_RS03900 (LYB30171_00787) | - | 841065..841457 (-) | 393 | WP_215219748.1 | response regulator transcription factor | - |
| KOD61_RS03905 (LYB30171_00788) | - | 841471..841911 (-) | 441 | WP_215219749.1 | response regulator | - |
Sequence
Protein
Download Length: 393 a.a. Molecular weight: 43385.83 Da Isoelectric Point: 6.7717
>NTDB_id=1150991 KOD61_RS03885 WP_215219745.1 837075..838256(+) (pilU) [Novilysobacter luteus strain CECT 30171]
MSTTPNTPTAGTAASPASGSIDFTSFLKLMAHQKASDLFITAGMPPSMKVNGKLQPITQNPLTPQQSRDLVLNVMNPMQR
EEFEKTHEANFAIGVAGVGRFRVSCFYQRNQVGMVLRRIETRIPTIEELNLPAVIKTLAMTKRGIIIFVGATGTGKSTSL
AAMIGYRNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWDNALKNTLRQAPDVIMIGEVRTREGMDHAIAFAET
GHLVLCTLHANNANQAMDRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGKGRRVAMEILLGTPLVQDYIRDGEIH
KLKEVMKESVQLGMKTFDQALFELYQAGEISYEDALRYADSQNEVRLRIKLAQGGDAKTLSAGLDGVEVAELR
MSTTPNTPTAGTAASPASGSIDFTSFLKLMAHQKASDLFITAGMPPSMKVNGKLQPITQNPLTPQQSRDLVLNVMNPMQR
EEFEKTHEANFAIGVAGVGRFRVSCFYQRNQVGMVLRRIETRIPTIEELNLPAVIKTLAMTKRGIIIFVGATGTGKSTSL
AAMIGYRNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWDNALKNTLRQAPDVIMIGEVRTREGMDHAIAFAET
GHLVLCTLHANNANQAMDRIINFFPEDRRNQLLMDLSLNLKGVVAQQLIPTPDGKGRRVAMEILLGTPLVQDYIRDGEIH
KLKEVMKESVQLGMKTFDQALFELYQAGEISYEDALRYADSQNEVRLRIKLAQGGDAKTLSAGLDGVEVAELR
Nucleotide
Download Length: 1182 bp
>NTDB_id=1150991 KOD61_RS03885 WP_215219745.1 837075..838256(+) (pilU) [Novilysobacter luteus strain CECT 30171]
ATGAGCACGACCCCGAATACCCCGACCGCAGGCACCGCTGCCAGCCCCGCTTCCGGCAGCATCGACTTCACGTCGTTCCT
GAAGTTGATGGCGCACCAGAAGGCCTCCGACCTGTTCATCACCGCCGGCATGCCGCCGTCGATGAAGGTCAACGGCAAGC
TGCAGCCGATCACGCAGAACCCGCTGACGCCGCAGCAGAGCCGCGACCTCGTGCTCAACGTGATGAACCCGATGCAGCGC
GAGGAGTTCGAGAAGACCCACGAGGCCAACTTCGCGATCGGCGTGGCCGGCGTCGGCCGCTTCCGCGTGTCGTGCTTCTA
CCAGCGCAACCAGGTCGGCATGGTGCTGCGCCGCATCGAGACGCGGATCCCGACGATCGAGGAGCTCAACCTGCCCGCGG
TGATCAAGACGCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGTGCAACCGGCACGGGTAAGTCGACCTCGCTG
GCGGCGATGATCGGCTACCGCAACCAGAACTCGACCGGCCACATCATCACGATCGAGGACCCGATCGAGTTCGTGCACAA
GCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGATACCGACAGCTGGGACAACGCGCTCAAGAACACCCTGC
GCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACGCGCGAGGGCATGGACCATGCCATCGCCTTCGCTGAAACC
GGCCACCTGGTGCTGTGCACGCTGCACGCCAACAACGCCAACCAGGCGATGGACCGCATCATCAACTTCTTCCCCGAGGA
TCGGCGCAACCAGTTGCTGATGGATCTGTCGCTCAACCTCAAGGGCGTGGTCGCGCAGCAGCTGATCCCGACCCCGGACG
GCAAGGGCCGCCGCGTGGCGATGGAGATCCTGCTCGGCACGCCGCTGGTACAGGACTACATCCGCGACGGCGAGATCCAC
AAGCTCAAGGAAGTGATGAAGGAATCCGTGCAGCTGGGCATGAAGACCTTCGACCAGGCCCTGTTCGAGCTGTACCAGGC
CGGCGAGATCAGCTACGAGGATGCACTGCGCTACGCCGACTCGCAGAACGAGGTGCGCCTGCGCATCAAGCTGGCCCAGG
GCGGCGACGCGAAGACGCTGTCTGCCGGACTGGACGGCGTCGAAGTGGCGGAGCTGCGCTGA
ATGAGCACGACCCCGAATACCCCGACCGCAGGCACCGCTGCCAGCCCCGCTTCCGGCAGCATCGACTTCACGTCGTTCCT
GAAGTTGATGGCGCACCAGAAGGCCTCCGACCTGTTCATCACCGCCGGCATGCCGCCGTCGATGAAGGTCAACGGCAAGC
TGCAGCCGATCACGCAGAACCCGCTGACGCCGCAGCAGAGCCGCGACCTCGTGCTCAACGTGATGAACCCGATGCAGCGC
GAGGAGTTCGAGAAGACCCACGAGGCCAACTTCGCGATCGGCGTGGCCGGCGTCGGCCGCTTCCGCGTGTCGTGCTTCTA
CCAGCGCAACCAGGTCGGCATGGTGCTGCGCCGCATCGAGACGCGGATCCCGACGATCGAGGAGCTCAACCTGCCCGCGG
TGATCAAGACGCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGTGCAACCGGCACGGGTAAGTCGACCTCGCTG
GCGGCGATGATCGGCTACCGCAACCAGAACTCGACCGGCCACATCATCACGATCGAGGACCCGATCGAGTTCGTGCACAA
GCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGATACCGACAGCTGGGACAACGCGCTCAAGAACACCCTGC
GCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCACGCGCGAGGGCATGGACCATGCCATCGCCTTCGCTGAAACC
GGCCACCTGGTGCTGTGCACGCTGCACGCCAACAACGCCAACCAGGCGATGGACCGCATCATCAACTTCTTCCCCGAGGA
TCGGCGCAACCAGTTGCTGATGGATCTGTCGCTCAACCTCAAGGGCGTGGTCGCGCAGCAGCTGATCCCGACCCCGGACG
GCAAGGGCCGCCGCGTGGCGATGGAGATCCTGCTCGGCACGCCGCTGGTACAGGACTACATCCGCGACGGCGAGATCCAC
AAGCTCAAGGAAGTGATGAAGGAATCCGTGCAGCTGGGCATGAAGACCTTCGACCAGGCCCTGTTCGAGCTGTACCAGGC
CGGCGAGATCAGCTACGAGGATGCACTGCGCTACGCCGACTCGCAGAACGAGGTGCGCCTGCGCATCAAGCTGGCCCAGG
GCGGCGACGCGAAGACGCTGTCTGCCGGACTGGACGGCGTCGAAGTGGCGGAGCTGCGCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
68.12 |
93.384 |
0.636 |
| pilU | Acinetobacter baylyi ADP1 |
63.842 |
90.076 |
0.575 |
| pilU | Vibrio cholerae strain A1552 |
54.775 |
90.585 |
0.496 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.359 |
94.911 |
0.402 |