Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   X808_RS09125 Genome accession   NZ_CP006943
Coordinates   1923127..1923456 (+) Length   109 a.a.
NCBI ID   WP_025218024.1    Uniprot ID   -
Organism   Mannheimia varigena USDA-ARS-USMARC-1296     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1918127..1928456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X808_RS09100 (X808_18130) rpsL 1918407..1918781 (-) 375 WP_005708967.1 30S ribosomal protein S12 -
  X808_RS09105 (X808_18140) rfaC 1918901..1919860 (-) 960 WP_025218020.1 lipopolysaccharide heptosyltransferase RfaC -
  X808_RS09110 (X808_18150) waaF 1919930..1920967 (-) 1038 WP_025218021.1 lipopolysaccharide heptosyltransferase II -
  X808_RS09115 (X808_18160) - 1921002..1921421 (-) 420 WP_025218022.1 MliC family protein -
  X808_RS09120 (X808_18170) - 1921480..1922838 (-) 1359 WP_025218023.1 LysM-like peptidoglycan-binding domain-containing protein -
  X808_RS09125 (X808_18180) comEA/comE1 1923127..1923456 (+) 330 WP_025218024.1 ComEA family DNA-binding protein Machinery gene
  X808_RS09130 (X808_18200) asd 1923618..1924508 (+) 891 WP_025218025.1 archaetidylserine decarboxylase -
  X808_RS09135 (X808_18210) gshAB 1924671..1926947 (+) 2277 WP_025218026.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  X808_RS09140 (X808_18220) manX 1927269..1928246 (+) 978 WP_025218027.1 PTS mannose transporter subunit IIAB -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11876.55 Da        Isoelectric Point: 6.3012

>NTDB_id=115057 X808_RS09125 WP_025218024.1 1923127..1923456(+) (comEA/comE1) [Mannheimia varigena USDA-ARS-USMARC-1296]
MKQMKTLALGLLMSLNTFAFAQTPPQIEQNSMPQTEQQVTQINTNAVNINTASAAELQDKLVGIGEKKAQAIVDYRTKNG
NFKSIEQLAEVSGIGQATVEKNRANIVLE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=115057 X808_RS09125 WP_025218024.1 1923127..1923456(+) (comEA/comE1) [Mannheimia varigena USDA-ARS-USMARC-1296]
ATGAAACAAATGAAAACTCTCGCGTTAGGCCTATTAATGAGCTTAAATACATTCGCTTTTGCTCAAACTCCACCTCAAAT
TGAGCAGAATAGTATGCCTCAAACTGAGCAACAAGTAACACAAATAAATACCAATGCCGTAAACATCAACACCGCAAGTG
CTGCTGAGTTACAAGATAAACTAGTAGGTATTGGCGAGAAAAAAGCTCAAGCGATTGTCGATTACCGTACCAAAAATGGT
AATTTTAAAAGCATTGAGCAGCTTGCCGAAGTATCCGGTATTGGACAAGCAACGGTAGAAAAAAATCGAGCAAATATCGT
TTTAGAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

53.097

100

0.55
  comE1/comEA Haemophilus influenzae Rd KW20

47.321

100

0.486
  comEA Vibrio campbellii strain DS40M4

39.815

99.083

0.394
  comEA Vibrio cholerae C6706

64.516

56.881

0.367
  comEA Vibrio cholerae strain A1552

64.516

56.881

0.367

Multiple sequence alignment