Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HUW69_RS00100 Genome accession   NZ_LT992490
Coordinates   22649..24172 (+) Length   507 a.a.
NCBI ID   WP_174566403.1    Uniprot ID   -
Organism   Vibrio cholerae strain 4295STDY6534200     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 17649..29172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW69_RS00085 (SAMEA4374365_00019) ilvE 19222..20160 (-) 939 WP_000201999.1 branched-chain-amino-acid transaminase -
  HUW69_RS00090 (SAMEA4374365_00020) ilvM 20172..20456 (-) 285 WP_001190201.1 acetolactate synthase 2 small subunit -
  HUW69_RS00095 (SAMEA4374365_00021) ilvG 20468..22114 (-) 1647 WP_142739532.1 acetolactate synthase 2 catalytic subunit -
  HUW69_RS00100 (SAMEA4374365_00022) comM 22649..24172 (+) 1524 WP_174566403.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HUW69_RS00105 (SAMEA4374365_00023) - 24267..24872 (-) 606 WP_029627881.1 thiol:disulfide interchange protein DsbA/DsbL -
  HUW69_RS00110 (SAMEA4374365_00024) - 24903..25889 (-) 987 WP_029627882.1 serine/threonine protein kinase -
  HUW69_RS00115 (SAMEA4374365_00025) ccoG 25937..27361 (-) 1425 WP_000076149.1 cytochrome c oxidase accessory protein CcoG -
  HUW69_RS00120 (SAMEA4374365_00026) - 27751..28017 (-) 267 WP_000649654.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55098.17 Da        Isoelectric Point: 8.3602

>NTDB_id=1150253 HUW69_RS00100 WP_174566403.1 22649..24172(+) (comM) [Vibrio cholerae strain 4295STDY6534200]
MGLAIIHSRASIGVQAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIARTKLESYEFIGELALSGEIRGVKGVLPAALAANQVERCLVVPHSNGDQAALVGVERHKSAQSL
LEVCADLCGQQTLSLFQSSPSVQQVSQTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASIASLTQQEINQHNWKLRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIVISRAQGKTRFPARFQLVGALNPSPTGYYEGSQARANPQSILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTAAVRQRVWVARERMLARSGKVNALLQSREIEQYCPLLKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEAQ
IARSHLAEALGYRAMDRLLKQLTTQNV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1150253 HUW69_RS00100 WP_174566403.1 22649..24172(+) (comM) [Vibrio cholerae strain 4295STDY6534200]
ATGGGACTTGCGATCATTCATAGCCGCGCCAGTATTGGCGTGCAGGCACCTCCGGTCACGGTTGAGGTTCACATCAGTAA
CGGGATGCCGGGGTTTACCTTAGTTGGGTTGCCGGAAACCACAGTAAAAGAGTCGCGCGATCGGGTGCGCAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCAGCGAAGCGCATTACGGTCAATTTAGCGCCAGCCGATTTACCCAAAGAGGGGGGACGT
TTTGATTTGCCGATTGCACTTGGCATTTTGGCGGCCTCGGATCAAATTGCGCGAACTAAGCTCGAAAGTTACGAATTTAT
CGGCGAATTGGCGCTATCGGGCGAAATTCGTGGCGTGAAGGGTGTATTGCCTGCCGCGCTCGCGGCTAACCAAGTGGAGC
GCTGTTTGGTGGTGCCGCACAGTAATGGCGATCAGGCGGCTTTGGTCGGGGTTGAGCGGCATAAGTCGGCGCAAAGCTTA
CTCGAAGTGTGCGCAGACTTGTGTGGTCAGCAAACTCTATCTTTGTTTCAAAGTTCGCCCAGTGTGCAACAAGTAAGTCA
GACGCGCGATCTGCAAGACATCATAGGTCAGCAGCAGGGAAAACGAGCTTTGGAAATCGCTGCGGCTGGCAATCACAACC
TATTGTTTCTCGGCCCTCCGGGGACGGGTAAAACCATGCTCGCTTCACGGCTGTGCGATTTACTGCCAGAAATGAGTGAT
GAAGAGGCAATGGAAACAGCTTCGATTGCCTCTCTTACGCAGCAAGAGATTAACCAACATAACTGGAAGTTACGCCCTTT
TCGTGCACCGCACCATTCAAGCTCAATGGCGGCTTTGGTCGGGGGCGGCACCATTCCGCGCCCCGGTGAAATTTCTCTCG
CCCATAATGGACTACTGTTTTTGGACGAAATGCCGGAGTTTGAGCGTAAAGTGCTGGATTCACTGCGTGAACCGCTGGAA
TCGGGTGAGATCGTGATTTCGCGCGCGCAGGGGAAAACCCGTTTTCCAGCACGCTTTCAATTAGTCGGCGCGTTAAATCC
AAGCCCCACGGGCTACTACGAAGGCAGTCAGGCGCGTGCCAATCCGCAGAGTATTTTGCGCTATTTGAGTCGGCTTTCGG
GCCCTTTGTTGGATCGCTTTGATATGTCGATTGAGATCCCAGCGTTACCCAAAGGTACGCTCGCCAATGGGGGCGATCGT
GGTGAATCGACGGCGGCTGTGCGCCAGCGAGTGTGGGTAGCGCGTGAGCGTATGTTGGCGCGATCGGGCAAAGTGAATGC
TTTGCTGCAAAGTCGAGAAATTGAACAGTATTGCCCTTTGCTTAAAGCGGATGCGGAATTTTTGGAAAGTGCGCTGCATC
GCTTGGGTTTATCGATTCGGGCTTACCATCGGATCATTAAAGTGGCGCGAACCATAGCGGATTTGCAAGGTGAAGCGCAG
ATCGCTCGTTCACATTTGGCCGAGGCGTTGGGCTATCGAGCCATGGATCGCTTACTCAAACAGCTAACTACTCAAAATGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

99.211

100

0.992
  comM Vibrio campbellii strain DS40M4

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

66.732

100

0.669
  comM Glaesserella parasuis strain SC1401

64.453

100

0.651
  comM Legionella pneumophila str. Paris

51.008

97.83

0.499
  comM Legionella pneumophila strain ERS1305867

51.008

97.83

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.222

100

0.434

Multiple sequence alignment