Detailed information
Bioinformatically predicted
Overview
| Name | comEA/comE1 | Type | Machinery gene |
| Locus tag | X781_RS01730 | Genome accession | NZ_CP006942 |
| Coordinates | 355626..355970 (-) | Length | 114 a.a. |
| NCBI ID | WP_025235270.1 | Uniprot ID | W0Q0L2 |
| Organism | Mannheimia sp. USDA-ARS-USMARC-1261 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 350626..360970
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| X781_RS01715 (X781_3420) | manX | 350826..351803 (-) | 978 | WP_025235267.1 | PTS mannose transporter subunit IIAB | - |
| X781_RS01720 (X781_3430) | gshAB | 352118..354394 (-) | 2277 | WP_025235268.1 | bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB | - |
| X781_RS01725 (X781_3440) | asd | 354557..355447 (-) | 891 | WP_025235269.1 | archaetidylserine decarboxylase | - |
| X781_RS01730 (X781_3450) | comEA/comE1 | 355626..355970 (-) | 345 | WP_025235270.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| X781_RS01735 (X781_3460) | - | 356261..357589 (+) | 1329 | WP_025235271.1 | LysM-like peptidoglycan-binding domain-containing protein | - |
| X781_RS01740 (X781_3470) | - | 357646..358065 (+) | 420 | WP_025235272.1 | MliC family protein | - |
| X781_RS01745 (X781_3480) | waaF | 358175..359212 (+) | 1038 | WP_038644082.1 | lipopolysaccharide heptosyltransferase II | - |
| X781_RS01750 (X781_3490) | rfaC | 359277..360236 (+) | 960 | WP_025235273.1 | lipopolysaccharide heptosyltransferase RfaC | - |
| X781_RS01755 (X781_3500) | rpsL | 360357..360731 (+) | 375 | WP_005708967.1 | 30S ribosomal protein S12 | - |
Sequence
Protein
Download Length: 114 a.a. Molecular weight: 12134.81 Da Isoelectric Point: 6.3227
>NTDB_id=115014 X781_RS01730 WP_025235270.1 355626..355970(-) (comEA/comE1) [Mannheimia sp. USDA-ARS-USMARC-1261]
MKIIKALSLSLLLGLSSYSLAQTAETAKVAETVPAQEVEQTTTQIQTSTNTVNINTATAAEIQDKLVGIGAKKAQAIVDY
RTKNGNFKSVEQLTEVSGIGQATLEKNRANIVLE
MKIIKALSLSLLLGLSSYSLAQTAETAKVAETVPAQEVEQTTTQIQTSTNTVNINTATAAEIQDKLVGIGAKKAQAIVDY
RTKNGNFKSVEQLTEVSGIGQATLEKNRANIVLE
Nucleotide
Download Length: 345 bp
>NTDB_id=115014 X781_RS01730 WP_025235270.1 355626..355970(-) (comEA/comE1) [Mannheimia sp. USDA-ARS-USMARC-1261]
ATGAAAATCATCAAAGCACTAAGTTTAAGTTTGTTACTGGGTTTGTCTTCTTACAGCTTGGCACAAACCGCTGAAACCGC
TAAAGTGGCAGAAACAGTACCTGCGCAAGAGGTGGAGCAAACGACTACTCAAATTCAAACCAGTACTAATACGGTCAATA
TCAACACTGCAACAGCTGCGGAAATTCAAGATAAATTAGTTGGCATCGGTGCCAAAAAAGCCCAAGCAATTGTCGATTAC
CGTACCAAAAACGGCAATTTCAAAAGCGTGGAACAGCTAACCGAAGTATCCGGCATCGGGCAAGCAACCTTAGAGAAAAA
TCGAGCTAATATTGTTTTAGAGTAA
ATGAAAATCATCAAAGCACTAAGTTTAAGTTTGTTACTGGGTTTGTCTTCTTACAGCTTGGCACAAACCGCTGAAACCGC
TAAAGTGGCAGAAACAGTACCTGCGCAAGAGGTGGAGCAAACGACTACTCAAATTCAAACCAGTACTAATACGGTCAATA
TCAACACTGCAACAGCTGCGGAAATTCAAGATAAATTAGTTGGCATCGGTGCCAAAAAAGCCCAAGCAATTGTCGATTAC
CGTACCAAAAACGGCAATTTCAAAAGCGTGGAACAGCTAACCGAAGTATCCGGCATCGGGCAAGCAACCTTAGAGAAAAA
TCGAGCTAATATTGTTTTAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
57.895 |
100 |
0.579 |
| comEA | Vibrio cholerae C6706 |
47.706 |
95.614 |
0.456 |
| comEA | Vibrio cholerae strain A1552 |
47.706 |
95.614 |
0.456 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
52.577 |
85.088 |
0.447 |