Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DXE59_RS03275 | Genome accession | NZ_LT992467 |
| Coordinates | 617097..617567 (-) | Length | 156 a.a. |
| NCBI ID | WP_000610650.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus isolate 16_LA_309 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 587646..640141 | 617097..617567 | within | 0 |
Gene organization within MGE regions
Location: 587646..640141
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DXE59_RS03045 | scn | 587646..587996 (-) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
| DXE59_RS03050 | - | 588679..589128 (+) | 450 | WP_000727643.1 | chemotaxis-inhibiting protein CHIPS | - |
| DXE59_RS03055 | - | 589221..589558 (-) | 338 | Protein_551 | SH3 domain-containing protein | - |
| DXE59_RS03075 | sak | 590206..590697 (-) | 492 | WP_000920041.1 | staphylokinase | - |
| DXE59_RS03080 | - | 590889..591644 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| DXE59_RS03085 | - | 591656..591910 (-) | 255 | WP_000611512.1 | phage holin | - |
| DXE59_RS03090 | - | 591962..592069 (+) | 108 | WP_031762631.1 | hypothetical protein | - |
| DXE59_RS03095 | pepG1 | 592122..592256 (-) | 135 | WP_000880504.1 | type I toxin-antitoxin system toxin PepG1 | - |
| DXE59_RS03100 | - | 592450..592746 (-) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| DXE59_RS03105 | - | 592804..593091 (-) | 288 | WP_001040261.1 | hypothetical protein | - |
| DXE59_RS03110 | - | 593138..593290 (-) | 153 | WP_001153681.1 | hypothetical protein | - |
| DXE59_RS03115 | - | 593280..597065 (-) | 3786 | WP_114636066.1 | phage tail spike protein | - |
| DXE59_RS03120 | - | 597081..598565 (-) | 1485 | WP_000567408.1 | phage distal tail protein | - |
| DXE59_RS03125 | - | 598562..603091 (-) | 4530 | WP_114636067.1 | phage tail tape measure protein | - |
| DXE59_RS15135 | gpGT | 603148..603285 (-) | 138 | WP_001549167.1 | phage tail assembly chaperone GT | - |
| DXE59_RS03130 | gpG | 603336..603686 (-) | 351 | WP_001096353.1 | phage tail assembly chaperone G | - |
| DXE59_RS03135 | - | 603736..604041 (-) | 306 | WP_114636068.1 | Ig-like domain-containing protein | - |
| DXE59_RS03140 | - | 604002..604643 (-) | 642 | WP_114636069.1 | major tail protein | - |
| DXE59_RS03145 | - | 604644..605051 (-) | 408 | WP_086095461.1 | hypothetical protein | - |
| DXE59_RS03150 | - | 605048..605452 (-) | 405 | WP_000114341.1 | HK97 gp10 family phage protein | - |
| DXE59_RS03155 | - | 605449..605811 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| DXE59_RS03160 | - | 605795..606079 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| DXE59_RS03165 | - | 606069..606353 (-) | 285 | WP_000238240.1 | hypothetical protein | - |
| DXE59_RS03170 | - | 606373..607518 (-) | 1146 | WP_033857025.1 | phage major capsid protein | - |
| DXE59_RS03175 | - | 607541..608278 (-) | 738 | WP_033857027.1 | head maturation protease, ClpP-related | - |
| DXE59_RS03180 | - | 608262..609434 (-) | 1173 | WP_114636070.1 | phage portal protein | - |
| DXE59_RS03185 | - | 609450..611111 (-) | 1662 | WP_000625085.1 | terminase large subunit | - |
| DXE59_RS03190 | - | 611108..611452 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| DXE59_RS03195 | - | 611582..611881 (-) | 300 | WP_000988333.1 | HNH endonuclease | - |
| DXE59_RS03200 | - | 612113..612529 (-) | 417 | WP_000590122.1 | hypothetical protein | - |
| DXE59_RS03205 | - | 612557..612757 (-) | 201 | WP_001794311.1 | DUF1514 family protein | - |
| DXE59_RS03210 | rinB | 612757..612906 (-) | 150 | WP_114636071.1 | transcriptional activator RinB | - |
| DXE59_RS03215 | - | 612903..613292 (-) | 390 | WP_001596346.1 | hypothetical protein | - |
| DXE59_RS03220 | - | 613282..613518 (-) | 237 | WP_000608275.1 | DUF7366 family protein | - |
| DXE59_RS03225 | - | 613511..613714 (-) | 204 | WP_000141180.1 | hypothetical protein | - |
| DXE59_RS03230 | - | 613711..613917 (-) | 207 | WP_000195794.1 | DUF1381 domain-containing protein | - |
| DXE59_RS03235 | - | 613954..614490 (-) | 537 | WP_031881549.1 | dUTPase | - |
| DXE59_RS03240 | - | 614483..614653 (-) | 171 | WP_000714407.1 | hypothetical protein | - |
| DXE59_RS03245 | - | 614640..614894 (-) | 255 | WP_114636072.1 | DUF1024 family protein | - |
| DXE59_RS03250 | - | 614909..615151 (-) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| DXE59_RS03255 | - | 615155..615523 (-) | 369 | WP_114636073.1 | SA1788 family PVL leukocidin-associated protein | - |
| DXE59_RS03260 | - | 615536..615940 (-) | 405 | WP_000401960.1 | RusA family crossover junction endodeoxyribonuclease | - |
| DXE59_RS03265 | - | 615949..616167 (-) | 219 | WP_000338530.1 | hypothetical protein | - |
| DXE59_RS03270 | - | 616174..617067 (-) | 894 | WP_000148335.1 | DnaD domain protein | - |
| DXE59_RS03275 | ssbA | 617097..617567 (-) | 471 | WP_000610650.1 | single-stranded DNA-binding protein | Machinery gene |
| DXE59_RS03280 | - | 617568..618185 (-) | 618 | WP_114636074.1 | MBL fold metallo-hydrolase | - |
| DXE59_RS03285 | - | 618266..619186 (-) | 921 | WP_031763788.1 | recombinase RecT | - |
| DXE59_RS03290 | - | 619188..621143 (-) | 1956 | WP_174220649.1 | AAA family ATPase | - |
| DXE59_RS03295 | - | 621140..621403 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| DXE59_RS03300 | - | 621412..621672 (-) | 261 | WP_031763794.1 | DUF1108 family protein | - |
| DXE59_RS03305 | - | 621677..621979 (-) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| DXE59_RS03310 | - | 622074..622235 (-) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| DXE59_RS03315 | - | 622232..622555 (-) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| DXE59_RS03320 | - | 622610..622990 (+) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| DXE59_RS03325 | - | 622977..623174 (-) | 198 | WP_001148856.1 | hypothetical protein | - |
| DXE59_RS03330 | - | 623190..623939 (-) | 750 | WP_001148337.1 | phage antirepressor KilAC domain-containing protein | - |
| DXE59_RS03335 | - | 623996..624535 (+) | 540 | WP_000351243.1 | hypothetical protein | - |
| DXE59_RS03340 | - | 624559..624819 (-) | 261 | WP_000435341.1 | transcriptional regulator | - |
| DXE59_RS03345 | - | 624867..625079 (-) | 213 | WP_000213811.1 | helix-turn-helix transcriptional regulator | - |
| DXE59_RS03350 | - | 625231..625962 (+) | 732 | WP_031924696.1 | XRE family transcriptional regulator | - |
| DXE59_RS03355 | - | 625978..626910 (+) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| DXE59_RS03360 | - | 626916..627257 (+) | 342 | WP_000591749.1 | hypothetical protein | - |
| DXE59_RS03365 | - | 627460..627627 (+) | 168 | WP_000705241.1 | hypothetical protein | - |
| DXE59_RS03370 | - | 627767..628471 (+) | 705 | WP_000440838.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| DXE59_RS03375 | - | 628665..629702 (+) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| DXE59_RS03380 | sph | 629759..630583 (+) | 825 | Protein_614 | sphingomyelin phosphodiesterase | - |
| DXE59_RS03385 | - | 630845..631861 (-) | 1017 | WP_000595612.1 | leukocidin/hemolysin toxin family protein | - |
| DXE59_RS03390 | - | 631883..632938 (-) | 1056 | WP_000791397.1 | leukocidin family pore-forming toxin | - |
| DXE59_RS03395 | - | 633370..634593 (+) | 1224 | WP_000206618.1 | ArgE/DapE family deacylase | - |
| DXE59_RS03400 | - | 634976..636283 (+) | 1308 | WP_001045074.1 | TrkH family potassium uptake protein | - |
| DXE59_RS14905 | - | 636822..637448 (-) | 627 | WP_000216896.1 | hypothetical protein | - |
| DXE59_RS03420 | - | 637445..637624 (-) | 180 | WP_000201398.1 | hypothetical protein | - |
| DXE59_RS03425 | groL | 638165..639781 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| DXE59_RS03430 | groES | 639857..640141 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17658.50 Da Isoelectric Point: 4.9628
>NTDB_id=1149685 DXE59_RS03275 WP_000610650.1 617097..617567(-) (ssbA) [Staphylococcus aureus isolate 16_LA_309]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDDDLPF
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINVIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=1149685 DXE59_RS03275 WP_000610650.1 617097..617567(-) (ssbA) [Staphylococcus aureus isolate 16_LA_309]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATAAATGTCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACGATGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.367 |
100 |
0.628 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.564 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Vibrio cholerae strain A1552 |
31.492 |
100 |
0.365 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |