Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DBR02_RS12210 Genome accession   NZ_LT991957
Coordinates   2447977..2448507 (+) Length   176 a.a.
NCBI ID   WP_006810470.1    Uniprot ID   -
Organism   Enterobacter cloacae complex sp. isolate C45     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2442977..2453507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBR02_RS12185 aphA 2443301..2444014 (+) 714 WP_107534472.1 acid phosphatase AphA -
  DBR02_RS12190 - 2444127..2444543 (+) 417 WP_063865498.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  DBR02_RS12195 - 2444546..2444899 (+) 354 WP_107534473.1 MmcQ/YjbR family DNA-binding protein -
  DBR02_RS12200 uvrA 2444903..2447725 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  DBR02_RS12210 ssb 2447977..2448507 (+) 531 WP_006810470.1 single-stranded DNA-binding protein SSB1 Machinery gene
  DBR02_RS12215 - 2448571..2448852 (-) 282 WP_022646751.1 YjcB family protein -
  DBR02_RS12220 - 2449635..2451200 (+) 1566 WP_107534474.1 EAL domain-containing protein -
  DBR02_RS12225 soxS 2451207..2451533 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  DBR02_RS12230 soxR 2451632..2452090 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -
  DBR02_RS12240 - 2452453..2453124 (+) 672 WP_063449849.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18892.89 Da        Isoelectric Point: 5.2456

>NTDB_id=1149139 DBR02_RS12210 WP_006810470.1 2447977..2448507(+) (ssb) [Enterobacter cloacae complex sp. isolate C45]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1149139 DBR02_RS12210 WP_006810470.1 2447977..2448507(+) (ssb) [Enterobacter cloacae complex sp. isolate C45]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGGGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAACTGCGTACCCGCAAATGGACTGACCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAACCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

77.222

100

0.79
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.597
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.369

Multiple sequence alignment