Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DBR02_RS09725 Genome accession   NZ_LT991957
Coordinates   1938301..1939821 (+) Length   506 a.a.
NCBI ID   WP_107534206.1    Uniprot ID   -
Organism   Enterobacter cloacae complex sp. isolate C45     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1933301..1944821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBR02_RS09705 ilvE 1934870..1935799 (-) 930 WP_003860182.1 branched-chain-amino-acid transaminase -
  DBR02_RS09710 ilvM 1935818..1936081 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  DBR02_RS09715 ilvG 1936078..1937724 (-) 1647 WP_107534204.1 acetolactate synthase 2 catalytic subunit -
  DBR02_RS26870 ilvX 1937727..1937777 (-) 51 WP_166792073.1 peptide IlvX -
  DBR02_RS09720 ilvL 1937864..1937962 (-) 99 WP_001311244.1 ilv operon leader peptide -
  DBR02_RS09725 comM 1938301..1939821 (+) 1521 WP_107534206.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DBR02_RS09730 - 1939849..1940187 (-) 339 WP_006808641.1 DUF413 domain-containing protein -
  DBR02_RS09735 hdfR 1940306..1941127 (+) 822 WP_063449988.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54781.72 Da        Isoelectric Point: 7.5495

>NTDB_id=1149133 DBR02_RS09725 WP_107534206.1 1938301..1939821(+) (comM) [Enterobacter cloacae complex sp. isolate C45]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTGLSSCEFVGELALTGALRGVPGAISSALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELAEPQEKEEVAPDSTEDLSDIMGQDQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQSGIRG
ESSAAVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1149133 DBR02_RS09725 WP_107534206.1 1938301..1939821(+) (comM) [Enterobacter cloacae complex sp. isolate C45]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCTATCGGAGTGAAGGCCCCGCTCATCTCTGTAGAGGTTCATTTAAGCAA
TGGCCTGCCCGGATTGACGCTGGTCGGCTTACCGGAAACCACCGTTAAAGAGGCGAGGGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGTTATGCTTTTCCCGCGAAGAAGATCACCATTAACCTGGCACCCGCTGATTTGCCAAAGGAGGGTGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAACACGACAGGGCTAAGCTCGTGCGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGGGGCGTTCCCGGTGCAATATCGAGTGCGCTTGAAGCCATACGTGCGGGAA
GACAAATCATTGTAGCCAATGAAAACGCCTCTGAAGTAAGCCTTATCGCCGAAAAGGGATGCCTGATTGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGTCGACACGAACTTGCCGAACCGCAGGAGAAGGAGGAGGTGGCGCCAGATTCAAC
TGAGGATCTCAGCGATATTATGGGTCAGGACCAGGGTAAGCGGGCGTTAGAGATTACTGCCGCGGGCGGGCATAACCTGT
TACTGATAGGACCGCCGGGCACGGGGAAAACGATGCTGGCGAGCAGGTTGAACGGCCTGCTGCCCCCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGTTGCATAAACAGTGGCGCCGCCGCCCTTTCCG
CTCGCCGCACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGAGGGTCGATTCCCGGACCGGGTGAAATCTCTCTGGCAC
ACAACGGCATTCTGTTCCTGGATGAACTGCCTGAGTTTGAACGCCGCGTGCTGGATGCATTGCGGGAACCGATTGAATCC
GGCGAGATCCATCTCTCTCGTACACGCGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCCGCGATGAACCCTAG
CCCAACGGGCCATTATCAGGGAAACCATAACCGCTGTACGCCGGAGCAGACGCTGCGCTATCTGAGTAAGCTGTCCGGGC
CCTTTCTCGACCGTTTTGATTTATCTCTGGAGATCCCCCTGCCACCGCCCGGTCTGTTGAGGCAAAGCGGTATTAGAGGC
GAAAGCTCAGCAGCGGTACGCGAACGGGTCATTGCGGCACAGGCGCGGCAGTATGCTCGACAAAACAGGCTGAATGCCCG
CCTGGATAACGCCGGGATCCGACAGTTTTGTTCTCTTAATGCCGAAGATGCAGGCTGGCTGGAGGAGACGCTGACGCGGT
TTGGACTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTCGCGCGCACCGTCGCGGACGTAGAAGGCTGCCCCGGAATT
GAGAGGCGGCATTTGCAGGAGGCATTAAGCTACCGTGCGATCGATCGGCTGCTGCTGCATCTGCAAAAAATGCTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.939

100

0.593
  comM Vibrio campbellii strain DS40M4

58.929

99.605

0.587
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio cholerae strain A1552

59.163

99.209

0.587
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.941

100

0.433

Multiple sequence alignment