Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DBR08_RS05905 Genome accession   NZ_LT991954
Coordinates   1195525..1196055 (+) Length   176 a.a.
NCBI ID   WP_006177466.1    Uniprot ID   A0AAE4E8Q4
Organism   Enterobacter hormaechei subsp. steigerwaltii isolate C309     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1190525..1201055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBR08_RS05880 aphA 1190849..1191562 (+) 714 WP_017382626.1 acid phosphatase AphA -
  DBR08_RS05885 - 1191675..1192091 (+) 417 WP_017382627.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  DBR08_RS05890 - 1192094..1192447 (+) 354 WP_017382628.1 MmcQ/YjbR family DNA-binding protein -
  DBR08_RS05895 uvrA 1192451..1195273 (-) 2823 WP_045341527.1 excinuclease ABC subunit UvrA -
  DBR08_RS05905 ssb 1195525..1196055 (+) 531 WP_006177466.1 single-stranded DNA-binding protein SSB1 Machinery gene
  DBR08_RS05910 - 1196117..1196398 (-) 282 WP_003860282.1 YjcB family protein -
  DBR08_RS05915 - 1196842..1198242 (+) 1401 WP_017382629.1 sensor domain-containing diguanylate cyclase -
  DBR08_RS05920 - 1198508..1200073 (+) 1566 WP_015570189.1 EAL domain-containing protein -
  DBR08_RS05925 soxS 1200080..1200406 (-) 327 WP_003860277.1 superoxide response transcriptional regulator SoxS -
  DBR08_RS05930 soxR 1200505..1200963 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18835.84 Da        Isoelectric Point: 5.2456

>NTDB_id=1149109 DBR08_RS05905 WP_006177466.1 1195525..1196055(+) (ssb) [Enterobacter hormaechei subsp. steigerwaltii isolate C309]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1149109 DBR08_RS05905 WP_006177466.1 1195525..1196055(+) (ssb) [Enterobacter hormaechei subsp. steigerwaltii isolate C309]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGAGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGCGCTGAGAAGTACACCACGGAAGTGGTGGTGAATGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAATCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364

Multiple sequence alignment