Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   VTAP4600_RS15510 Genome accession   NZ_LT960611
Coordinates   3452959..3454482 (+) Length   507 a.a.
NCBI ID   WP_102523612.1    Uniprot ID   A0A2N8ZH63
Organism   Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3447959..3459482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VTAP4600_RS15495 (VTAP4600_A3289) - 3449611..3450561 (-) 951 WP_102523609.1 branched-chain amino acid transaminase -
  VTAP4600_RS15500 (VTAP4600_A3290) ilvM 3450573..3450857 (-) 285 WP_102523610.1 acetolactate synthase 2 small subunit -
  VTAP4600_RS15505 (VTAP4600_A3291) ilvG 3450857..3452503 (-) 1647 WP_102523611.1 acetolactate synthase 2 catalytic subunit -
  VTAP4600_RS15510 (VTAP4600_A3292) comM 3452959..3454482 (+) 1524 WP_102523612.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  VTAP4600_RS15515 (VTAP4600_A3293) - 3454479..3455447 (-) 969 WP_102523613.1 DUF2860 family protein -
  VTAP4600_RS15520 (VTAP4600_A3294) - 3455635..3456519 (+) 885 WP_102523614.1 acyltransferase -
  VTAP4600_RS26610 - 3456624..3457947 (+) 1324 Protein_3016 IS4 family transposase -
  VTAP4600_RS15530 (VTAP4600_A3297) - 3457997..3458587 (-) 591 WP_172443166.1 thiol:disulfide interchange protein DsbA/DsbL -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54936.19 Da        Isoelectric Point: 7.7262

>NTDB_id=1148326 VTAP4600_RS15510 WP_102523612.1 3452959..3454482(+) (comM) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
MGLAIINSRACIGVEAPEVTVEVHISNGMPGFCLVGLPETTVKESRDRVRSAIVNSGFEMPAKRITVNLAPADLPKEGGR
FDLPIALGILAASDQIAVTKLGTYEFVGELALSGELRPVKGVLPAALAANSKNRCLVVPDENGDQAALVGEKRHKSSAHL
LDVCADLSGQKVMSLFQTTRYQPPEAPERCLRDIIGQQQGKRALEIAAAGSHDVLFLGPPGTGKTMLASRLCDLLPEMDE
TEAMETAAVASLTQQEINQHNWKQRPFRSPHHSSSMAALVGGGSMPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQSRTNPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGTLAQGGER
GEATSIVKKRVVTARETMLSRGGKVNALLGTRELDKHCGLEKADAEFLENALHRLGLSIRAYHRIIKVARTIADLDGQDS
ITRPHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1148326 VTAP4600_RS15510 WP_102523612.1 3452959..3454482(+) (comM) [Vibrio tapetis subsp. tapetis isolate Vibrio tapetis CECT4600]
ATGGGATTGGCAATTATTAACAGCCGAGCGTGCATTGGTGTTGAAGCACCAGAGGTAACGGTAGAAGTTCATATTAGTAA
CGGAATGCCAGGTTTCTGCTTGGTGGGCCTTCCTGAGACAACGGTGAAAGAGTCTAGAGATAGGGTACGCAGTGCGATTG
TTAATTCAGGGTTTGAGATGCCCGCAAAGCGGATCACCGTCAATCTTGCGCCAGCAGATTTACCCAAAGAAGGAGGGCGG
TTCGATTTACCCATCGCATTAGGGATCTTAGCCGCCTCAGATCAAATAGCCGTCACTAAGCTCGGTACCTATGAATTTGT
TGGTGAGTTAGCTCTTTCAGGTGAATTGCGACCGGTAAAAGGCGTCTTGCCAGCCGCATTGGCCGCCAATAGCAAAAATC
GGTGCTTGGTAGTGCCGGATGAAAACGGCGATCAAGCCGCGTTAGTGGGTGAAAAAAGGCACAAGTCATCAGCGCATTTA
TTGGATGTATGCGCCGATTTATCGGGTCAAAAGGTCATGTCTCTTTTCCAAACCACCCGCTATCAGCCGCCAGAAGCACC
GGAACGTTGCTTGCGAGATATTATTGGTCAACAGCAAGGAAAACGTGCGCTAGAAATCGCCGCTGCTGGCAGTCATGACG
TGCTTTTTTTAGGCCCTCCAGGTACCGGAAAAACCATGCTAGCTTCAAGGTTGTGTGATTTATTGCCCGAGATGGATGAA
ACCGAAGCCATGGAAACGGCCGCCGTGGCGTCATTAACGCAACAAGAAATTAATCAGCACAATTGGAAACAACGTCCGTT
TCGCTCTCCTCACCACTCGAGTTCAATGGCGGCATTGGTGGGAGGCGGGTCGATGCCAAGACCCGGAGAAATATCTTTGG
CTCATAATGGTTTGTTGTTCTTGGATGAAATGCCAGAGTTTGAGCGAAAGGTGTTGGACTCATTGCGTGAGCCGTTGGAA
TCTGGCGAAATCATTATTTCCAGAGCGGCGGGTAAAACACGATTTCCTGCTCGATTCCAATTGGTCGGTGCGCTTAACCC
TAGCCCTACCGGGTATTACGAAGGTAATCAATCCCGTACCAATCCTCAAATCATCTTGCGTTATTTGAATCGCCTTTCTG
GGCCGCTACTTGATCGATTTGATATGTCTTTGGAAATTCCGCTTTTACCTAAGGGCACCTTGGCGCAAGGAGGTGAGAGG
GGGGAAGCGACATCCATCGTAAAAAAACGAGTCGTGACAGCCAGAGAAACCATGTTGTCTCGCGGCGGTAAAGTGAATGC
GTTATTAGGGACGAGAGAGCTTGATAAGCATTGTGGACTAGAAAAAGCCGATGCTGAGTTTTTGGAGAATGCACTGCACA
GACTTGGCTTATCGATAAGGGCATATCATCGAATCATCAAAGTCGCACGCACGATTGCAGATTTAGACGGTCAGGATTCT
ATAACAAGGCCTCACTTAGCGGAGGCCTTAGGGTATAGAGCTATGGATCGGTTATTGAAACAGCTTACCGCGCAAGCCGT
TTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8ZH63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

81.854

100

0.819
  comM Vibrio campbellii strain DS40M4

81.657

100

0.817
  comM Haemophilus influenzae Rd KW20

63.458

100

0.637
  comM Glaesserella parasuis strain SC1401

62.549

100

0.629
  comM Legionella pneumophila str. Paris

48.016

99.408

0.477
  comM Legionella pneumophila strain ERS1305867

48.016

99.408

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.524

100

0.432

Multiple sequence alignment