Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CKV74_RS03595 Genome accession   NZ_LT906463
Coordinates   706366..707892 (+) Length   508 a.a.
NCBI ID   WP_007242362.1    Uniprot ID   F9Q8Q1
Organism   Haemophilus pittmaniae strain NCTC13334     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 701366..712892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV74_RS03580 (NCTC13334_00723) fdhF 702376..704529 (+) 2154 WP_094188644.1 formate dehydrogenase subunit alpha -
  CKV74_RS03585 (NCTC13334_00724) - 704570..705442 (-) 873 WP_095176751.1 DUF535 family protein -
  CKV74_RS03590 (NCTC13334_00725) yihA 705535..706152 (+) 618 WP_007242456.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  CKV74_RS03595 (NCTC13334_00726) comM 706366..707892 (+) 1527 WP_007242362.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CKV74_RS03600 (NCTC13334_00727) carB 708012..711215 (-) 3204 WP_095176752.1 carbamoyl-phosphate synthase large subunit -
  CKV74_RS03605 (NCTC13334_00728) - 711258..711713 (-) 456 WP_007242476.1 hypothetical protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55614.39 Da        Isoelectric Point: 9.6236

>NTDB_id=1147720 CKV74_RS03595 WP_007242362.1 706366..707892(+) (comM) [Haemophilus pittmaniae strain NCTC13334]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPCFTLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPLAIGMLVAMEHIPAQRLQAFELLGELALTGELRGVHGVIPAILAAQKARRIAIVAAQNANEAALVANANCVIARNL
LEVVQFLNQQIELPNAADFQQQSTQTLPSYSLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTILPE
MSDQEAIETASVTSLVQNELNLHNWKQRPFRAPHHSASIPALVGGGSIPKPGEISLAHNGVLFLDELPEFERKVLDALRQ
PLESGEIVISRANAKICFPARFQLIAAMNPSPTGHYSGVHNRTSPQQMMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQQN
VDRGADSATVRRQILQVREMQLARAGKINAYLSGKEIERDCKLTLEDALFLEKALNKLGLSVRAYHRILKVARTIADLQQ
EAQINRTHLAEALGYRAMDRLLQKLSAL

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=1147720 CKV74_RS03595 WP_007242362.1 706366..707892(+) (comM) [Haemophilus pittmaniae strain NCTC13334]
ATGTCATTAGCAATTGTGTATAGTCGCGCGTCGATGGGAGTACAGGCTCCTTTAGTTACTATTGAAGTACATTTAAGTAA
CGGCAAGCCTTGCTTTACTTTGGTCGGTTTGCCGGAGAAAACCGTGAAAGAGGCGCAGGATCGGGTGCGTAGTGCTTTGT
TGAATGCCCAGTTTAAATATCCCGCCAAGCGCATTACGGTGAATCTTGCGCCGGCGGATTTACCAAAGGAAGGCGGGCGT
TTTGATTTGCCCTTAGCGATAGGGATGTTGGTGGCAATGGAACATATTCCTGCGCAGCGCCTGCAAGCCTTTGAGTTATT
GGGTGAGTTGGCGTTAACCGGTGAATTGCGAGGAGTACATGGGGTGATTCCGGCAATTTTGGCCGCGCAAAAGGCTCGTC
GAATTGCCATTGTAGCGGCACAGAATGCTAATGAGGCAGCTTTGGTAGCGAATGCCAATTGTGTGATTGCTCGTAATTTG
CTGGAGGTCGTGCAGTTTCTCAATCAGCAAATTGAGTTGCCAAATGCAGCGGATTTTCAACAGCAGAGCACTCAGACATT
GCCATCCTATAGTTTGGATTTGACGGATATTATCGGTCAACAACACGCCAAACGAGCACTTACGATTGCCGCTGCAGGGC
AACACAATTTGCTCTTTTTAGGACCTCCCGGCACCGGAAAAACCATGTTGGCTAGCCGTCTTACCACAATATTACCGGAA
ATGAGTGATCAAGAAGCCATTGAAACGGCCTCTGTAACCAGTTTGGTGCAAAACGAACTGAATCTACATAATTGGAAACA
ACGCCCATTTCGAGCCCCCCATCATAGCGCGTCAATACCGGCCTTAGTGGGAGGAGGCTCTATTCCCAAGCCGGGAGAAA
TTTCCTTGGCGCATAACGGCGTGTTGTTTTTGGATGAGTTGCCGGAGTTTGAGCGCAAGGTGTTAGACGCGTTACGTCAG
CCGTTGGAAAGCGGTGAAATTGTGATTTCCCGTGCCAATGCGAAGATTTGTTTCCCCGCCCGTTTTCAGTTGATTGCAGC
GATGAACCCTAGCCCAACCGGTCATTATAGCGGAGTACACAATCGTACTTCACCACAGCAAATGATGCGTTATTTAAATC
GTTTATCGGGGCCATTTTTGGATCGCTTTGATTTGTCTATCGAAGTACCTTTGTTACCGCAGGGCAGTTTGCAACAAAAT
GTCGATCGCGGCGCTGATAGCGCAACGGTACGTCGGCAGATTCTACAGGTACGGGAAATGCAATTGGCTCGGGCCGGAAA
AATTAACGCTTACTTGAGCGGTAAGGAAATTGAACGGGACTGCAAGCTCACGCTGGAAGATGCCTTGTTCTTGGAAAAAG
CCCTGAATAAATTAGGTTTGTCGGTGCGTGCCTACCATCGTATTCTCAAGGTCGCGCGCACTATTGCCGATTTGCAGCAG
GAGGCGCAAATTAATCGCACTCACTTAGCCGAAGCCCTTGGTTATCGCGCAATGGATCGCTTATTGCAAAAATTATCCGC
GCTTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9Q8Q1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

81.336

100

0.815
  comM Glaesserella parasuis strain SC1401

75.889

99.606

0.756
  comM Vibrio cholerae strain A1552

65.815

100

0.659
  comM Vibrio campbellii strain DS40M4

64.497

99.803

0.644
  comM Legionella pneumophila str. Paris

50.398

98.819

0.498
  comM Legionella pneumophila strain ERS1305867

50.398

98.819

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.224

100

0.457

Multiple sequence alignment