Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CKV74_RS00595 Genome accession   NZ_LT906463
Coordinates   133106..133591 (+) Length   161 a.a.
NCBI ID   WP_007241594.1    Uniprot ID   -
Organism   Haemophilus pittmaniae strain NCTC13334     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 128106..138591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV74_RS00585 (NCTC13334_00118) aspA 128472..129893 (+) 1422 WP_007241629.1 aspartate ammonia-lyase -
  CKV74_RS00590 (NCTC13334_00119) uvrA 130118..132949 (-) 2832 WP_007241680.1 excinuclease ABC subunit UvrA -
  CKV74_RS00595 (NCTC13334_00120) ssb 133106..133591 (+) 486 WP_007241594.1 single-stranded DNA-binding protein Machinery gene
  CKV74_RS00600 (NCTC13334_00121) - 133825..134403 (+) 579 WP_007241540.1 NAD(P)H-dependent oxidoreductase -
  CKV74_RS00605 (NCTC13334_00122) - 134738..136027 (+) 1290 WP_095176612.1 ATP-binding protein -
  CKV74_RS00610 (NCTC13334_00123) - 136008..137498 (+) 1491 WP_231897297.1 SIR2 family protein -
  CKV74_RS00615 (NCTC13334_00124) - 137501..137995 (+) 495 WP_007241627.1 TIR domain-containing protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17868.78 Da        Isoelectric Point: 5.2704

>NTDB_id=1147706 CKV74_RS00595 WP_007241594.1 133106..133591(+) (ssb) [Haemophilus pittmaniae strain NCTC13334]
MAGINKVIIVGNLGNDPEVRTMPNGDAVANISVATSESWTDRNTGERREVTEWHRIVFFRRQAEVCGEYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRQNAGDFQQSAPSYGAPNSQPSYQARPAAKPAAAPQPAAEPPMDFDDNIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=1147706 CKV74_RS00595 WP_007241594.1 133106..133591(+) (ssb) [Haemophilus pittmaniae strain NCTC13334]
ATGGCAGGTATTAATAAAGTAATTATCGTGGGTAATTTAGGTAACGATCCCGAAGTGCGCACCATGCCGAACGGCGATGC
TGTTGCGAACATCAGCGTAGCAACCAGTGAAAGCTGGACTGACCGTAACACCGGTGAACGTCGCGAAGTGACCGAATGGC
ACCGCATCGTATTTTTCCGTCGTCAAGCGGAAGTCTGTGGTGAATACCTGCGTAAGGGCTCTCAAGTGTACGTAGAAGGC
CGCTTAAAAACCCGTAAATGGCAAGATCAAAACGGCCAAGATCGCTACACCACCGAAATTCAAGGCGATGTATTACAAAT
GTTAGGCGGTCGTCAAAACGCTGGTGACTTCCAACAAAGCGCCCCATCCTACGGTGCACCAAATAGCCAACCTAGCTATC
AAGCTCGCCCAGCAGCTAAACCTGCTGCAGCACCACAACCGGCAGCTGAACCACCAATGGATTTTGACGACAATATTCCG
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

66.667

100

0.758
  ssb Vibrio cholerae strain A1552

56.818

100

0.621
  ssb Neisseria meningitidis MC58

47.977

100

0.516
  ssb Neisseria gonorrhoeae MS11

47.977

100

0.516
  ssb Latilactobacillus sakei subsp. sakei 23K

33.721

100

0.36

Multiple sequence alignment