Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | CKV74_RS00420 | Genome accession | NZ_LT906463 |
| Coordinates | 85072..86292 (+) | Length | 406 a.a. |
| NCBI ID | WP_095176600.1 | Uniprot ID | - |
| Organism | Haemophilus pittmaniae strain NCTC13334 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 80072..91292
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV74_RS00395 (NCTC13334_00080) | - | 80732..81526 (-) | 795 | WP_007241724.1 | sulfite exporter TauE/SafE family protein | - |
| CKV74_RS00400 (NCTC13334_00081) | rppH | 81526..82110 (-) | 585 | WP_007241732.1 | RNA pyrophosphohydrolase | - |
| CKV74_RS10615 | - | 82273..82407 (-) | 135 | WP_269457018.1 | hypothetical protein | - |
| CKV74_RS00405 (NCTC13334_00082) | ampD | 82577..83125 (-) | 549 | WP_007241547.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| CKV74_RS00410 (NCTC13334_00083) | pilA | 83253..83702 (+) | 450 | WP_007241769.1 | prepilin peptidase-dependent pilin | Machinery gene |
| CKV74_RS00415 (NCTC13334_00084) | pilB | 83702..85072 (+) | 1371 | WP_007241714.1 | GspE/PulE family protein | Machinery gene |
| CKV74_RS00420 (NCTC13334_00085) | pilC | 85072..86292 (+) | 1221 | WP_095176600.1 | type II secretion system F family protein | Machinery gene |
| CKV74_RS00425 (NCTC13334_00086) | - | 86289..86957 (+) | 669 | WP_007241801.1 | A24 family peptidase | - |
| CKV74_RS00430 (NCTC13334_00087) | coaE | 87018..87653 (+) | 636 | WP_007241821.1 | dephospho-CoA kinase | - |
| CKV74_RS00435 (NCTC13334_00088) | yacG | 87646..87852 (+) | 207 | WP_007241731.1 | DNA gyrase inhibitor YacG | - |
| CKV74_RS00440 (NCTC13334_00089) | - | 87849..88109 (+) | 261 | WP_095176601.1 | GNAT family N-acetyltransferase | - |
| CKV74_RS00445 (NCTC13334_00090) | cgtA | 88252..89421 (-) | 1170 | WP_007241610.1 | Obg family GTPase CgtA | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 45945.31 Da Isoelectric Point: 9.2172
>NTDB_id=1147704 CKV74_RS00420 WP_095176600.1 85072..86292(+) (pilC) [Haemophilus pittmaniae strain NCTC13334]
MKEKIFYYRAHNTLGQVQQGNIIALNKVIARQRLMDKGFYRIRLQQDWRLSNKPQNNEICALLSQLAMLLQSSIELKHAL
HIARDNCSQPALYRWLQSLIGHLESGFSFSQAIEAQGKYLDRQELQLLQAGELSGQLANVCLHLAEHRKRALLLQHKLQK
IMLYPLMVLGISVVLTVILLIFVVPQFAAMYGTNGNELPALTAFLLALSEFIRQYPIPLLIFPLLIAIIWRQALHHSLTL
NQYKAQLIGQAPIFGKIIALSRLVKFSHSLALMLQSGVPLNAALNSFLEIPKSWQKNPLQQGDPVLQQEVRNLLQWVEQG
YLFSASVSSLLFPMEAQQMLAIGEQSGHLAEMLQNIAQDHQHKLDHQIDLLSQMLEPCLMLIIGGLIGMIMLGMYLPIFN
MGSIIQ
MKEKIFYYRAHNTLGQVQQGNIIALNKVIARQRLMDKGFYRIRLQQDWRLSNKPQNNEICALLSQLAMLLQSSIELKHAL
HIARDNCSQPALYRWLQSLIGHLESGFSFSQAIEAQGKYLDRQELQLLQAGELSGQLANVCLHLAEHRKRALLLQHKLQK
IMLYPLMVLGISVVLTVILLIFVVPQFAAMYGTNGNELPALTAFLLALSEFIRQYPIPLLIFPLLIAIIWRQALHHSLTL
NQYKAQLIGQAPIFGKIIALSRLVKFSHSLALMLQSGVPLNAALNSFLEIPKSWQKNPLQQGDPVLQQEVRNLLQWVEQG
YLFSASVSSLLFPMEAQQMLAIGEQSGHLAEMLQNIAQDHQHKLDHQIDLLSQMLEPCLMLIIGGLIGMIMLGMYLPIFN
MGSIIQ
Nucleotide
Download Length: 1221 bp
>NTDB_id=1147704 CKV74_RS00420 WP_095176600.1 85072..86292(+) (pilC) [Haemophilus pittmaniae strain NCTC13334]
ATGAAAGAAAAGATTTTTTATTACCGTGCCCATAATACCTTAGGACAAGTGCAGCAAGGTAATATCATCGCCCTCAATAA
AGTAATTGCCCGCCAGCGCTTAATGGACAAAGGTTTCTACCGTATTCGCCTACAACAGGACTGGCGTCTTTCCAATAAAC
CCCAAAATAATGAAATCTGTGCACTATTAAGCCAGTTGGCGATGCTCCTACAATCCTCTATCGAATTAAAGCATGCCCTG
CATATCGCCCGAGATAATTGTAGTCAACCGGCACTTTACCGGTGGCTACAATCACTCATCGGCCATTTAGAAAGCGGCTT
TTCCTTTTCGCAAGCAATTGAAGCTCAAGGTAAATACCTTGATCGCCAAGAGCTCCAATTATTACAAGCAGGTGAGTTGA
GTGGTCAATTAGCGAATGTCTGCCTGCACCTTGCGGAGCATCGTAAACGCGCTTTGCTACTCCAGCATAAACTACAAAAA
ATTATGCTCTATCCTCTGATGGTTTTGGGTATTTCCGTGGTGCTCACAGTGATTTTATTGATTTTTGTGGTACCACAATT
TGCTGCGATGTACGGTACAAACGGTAACGAGTTGCCAGCATTAACCGCATTTCTATTAGCACTATCGGAATTTATCCGGC
AATACCCTATCCCTCTATTAATCTTCCCTTTACTCATCGCAATTATCTGGCGACAGGCATTACACCACTCTTTAACGCTC
AATCAGTATAAAGCTCAGCTTATTGGGCAAGCACCTATTTTCGGCAAAATTATTGCGCTTTCCCGATTAGTCAAATTTTC
CCATAGTCTCGCTCTCATGTTGCAATCGGGAGTCCCTTTAAATGCCGCCTTAAACAGCTTTCTAGAAATTCCTAAAAGTT
GGCAAAAAAATCCGTTACAACAAGGTGATCCGGTTTTACAGCAGGAAGTACGCAATCTTTTGCAATGGGTAGAACAGGGC
TATCTGTTCTCCGCCAGTGTCAGCAGTCTATTATTTCCAATGGAAGCACAACAAATGTTGGCAATTGGTGAACAAAGCGG
GCATTTAGCAGAGATGCTGCAAAATATTGCGCAAGACCACCAACACAAACTGGATCACCAAATTGATCTACTCTCACAGA
TGCTTGAACCCTGTTTAATGCTGATTATTGGTGGGCTTATCGGGATGATTATGCTCGGTATGTATTTACCAATTTTTAAT
ATGGGATCGATAATCCAATGA
ATGAAAGAAAAGATTTTTTATTACCGTGCCCATAATACCTTAGGACAAGTGCAGCAAGGTAATATCATCGCCCTCAATAA
AGTAATTGCCCGCCAGCGCTTAATGGACAAAGGTTTCTACCGTATTCGCCTACAACAGGACTGGCGTCTTTCCAATAAAC
CCCAAAATAATGAAATCTGTGCACTATTAAGCCAGTTGGCGATGCTCCTACAATCCTCTATCGAATTAAAGCATGCCCTG
CATATCGCCCGAGATAATTGTAGTCAACCGGCACTTTACCGGTGGCTACAATCACTCATCGGCCATTTAGAAAGCGGCTT
TTCCTTTTCGCAAGCAATTGAAGCTCAAGGTAAATACCTTGATCGCCAAGAGCTCCAATTATTACAAGCAGGTGAGTTGA
GTGGTCAATTAGCGAATGTCTGCCTGCACCTTGCGGAGCATCGTAAACGCGCTTTGCTACTCCAGCATAAACTACAAAAA
ATTATGCTCTATCCTCTGATGGTTTTGGGTATTTCCGTGGTGCTCACAGTGATTTTATTGATTTTTGTGGTACCACAATT
TGCTGCGATGTACGGTACAAACGGTAACGAGTTGCCAGCATTAACCGCATTTCTATTAGCACTATCGGAATTTATCCGGC
AATACCCTATCCCTCTATTAATCTTCCCTTTACTCATCGCAATTATCTGGCGACAGGCATTACACCACTCTTTAACGCTC
AATCAGTATAAAGCTCAGCTTATTGGGCAAGCACCTATTTTCGGCAAAATTATTGCGCTTTCCCGATTAGTCAAATTTTC
CCATAGTCTCGCTCTCATGTTGCAATCGGGAGTCCCTTTAAATGCCGCCTTAAACAGCTTTCTAGAAATTCCTAAAAGTT
GGCAAAAAAATCCGTTACAACAAGGTGATCCGGTTTTACAGCAGGAAGTACGCAATCTTTTGCAATGGGTAGAACAGGGC
TATCTGTTCTCCGCCAGTGTCAGCAGTCTATTATTTCCAATGGAAGCACAACAAATGTTGGCAATTGGTGAACAAAGCGG
GCATTTAGCAGAGATGCTGCAAAATATTGCGCAAGACCACCAACACAAACTGGATCACCAAATTGATCTACTCTCACAGA
TGCTTGAACCCTGTTTAATGCTGATTATTGGTGGGCTTATCGGGATGATTATGCTCGGTATGTATTTACCAATTTTTAAT
ATGGGATCGATAATCCAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Haemophilus influenzae Rd KW20 |
58.128 |
100 |
0.581 |
| pilC | Haemophilus influenzae 86-028NP |
57.635 |
100 |
0.576 |
| pilC | Glaesserella parasuis strain SC1401 |
36.908 |
98.768 |
0.365 |