Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | CKV85_RS10430 | Genome accession | NZ_LT906454 |
| Coordinates | 2121451..2122404 (-) | Length | 317 a.a. |
| NCBI ID | WP_095123575.1 | Uniprot ID | - |
| Organism | Streptococcus acidominimus strain NCTC11291 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2116451..2127404
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV85_RS10400 (SAMEA4504048_02222) | - | 2117250..2117918 (-) | 669 | WP_095123571.1 | CPBP family intramembrane glutamic endopeptidase | - |
| CKV85_RS10405 (SAMEA4504048_02223) | - | 2117952..2118404 (-) | 453 | WP_095123572.1 | hypothetical protein | - |
| CKV85_RS10410 (SAMEA4504048_02224) | - | 2118479..2119483 (+) | 1005 | WP_095123573.1 | IS5 family transposase | - |
| CKV85_RS10415 (SAMEA4504048_02225) | - | 2119613..2119810 (-) | 198 | WP_017770225.1 | helix-turn-helix transcriptional regulator | - |
| CKV85_RS10425 (SAMEA4504048_02227) | - | 2120200..2121390 (-) | 1191 | WP_017770223.1 | acetate kinase | - |
| CKV85_RS10430 (SAMEA4504048_02228) | comYH | 2121451..2122404 (-) | 954 | WP_095123575.1 | class I SAM-dependent methyltransferase | Machinery gene |
| CKV85_RS10435 (SAMEA4504048_02229) | comGG | 2122476..2122865 (-) | 390 | WP_197697097.1 | competence type IV pilus minor pilin ComGG | - |
| CKV85_RS10440 (SAMEA4504048_02230) | comYF | 2122843..2123280 (-) | 438 | WP_017770220.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| CKV85_RS10445 | comGE | 2123258..2123503 (-) | 246 | WP_231909805.1 | competence system putative prepilin ComGE | - |
| CKV85_RS10450 (SAMEA4504048_02231) | comGD | 2123529..2123945 (-) | 417 | WP_095123577.1 | competence type IV pilus minor pilin ComGD | - |
| CKV85_RS10455 (SAMEA4504048_02232) | comYC | 2123929..2124219 (-) | 291 | WP_095123578.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CKV85_RS10460 (SAMEA4504048_02233) | comYB | 2124220..2125170 (-) | 951 | WP_269457190.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| CKV85_RS10465 (SAMEA4504048_02234) | comYA | 2125172..2126125 (-) | 954 | WP_017770215.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CKV85_RS10470 (SAMEA4504048_02235) | - | 2126245..2126625 (-) | 381 | WP_017770214.1 | DUF1033 family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35775.59 Da Isoelectric Point: 4.3351
>NTDB_id=1147510 CKV85_RS10430 WP_095123575.1 2121451..2122404(-) (comYH) [Streptococcus acidominimus strain NCTC11291]
MNFEKIESAYQLLLENCQLIENEIKTTIYDAMIEQNAYYLGAENAPEKVTENNQTLADLHLTAEEWRRAYQFLFIKAAQT
EPLQANHQFTPDTIGFLLLYLVETLTSKEHLDLIEIGSGTGNLAQTILNNTDRNIDYLGLELDDLLIDLSASVAEIVGSS
VHFLQEDAVRPQILKESDVILGDLPVGYYPNDDIAKRYQVAASDGHTYAHHLLMEQSLKYLKQDGLAILLAPTDLLTSAQ
SDLLKTWLSSYASILAVITLPDHLFGNPKNAKSVFVLKKQMVEKVETFAYHLADIQNPDILQDFMEKLKNWKDDNAI
MNFEKIESAYQLLLENCQLIENEIKTTIYDAMIEQNAYYLGAENAPEKVTENNQTLADLHLTAEEWRRAYQFLFIKAAQT
EPLQANHQFTPDTIGFLLLYLVETLTSKEHLDLIEIGSGTGNLAQTILNNTDRNIDYLGLELDDLLIDLSASVAEIVGSS
VHFLQEDAVRPQILKESDVILGDLPVGYYPNDDIAKRYQVAASDGHTYAHHLLMEQSLKYLKQDGLAILLAPTDLLTSAQ
SDLLKTWLSSYASILAVITLPDHLFGNPKNAKSVFVLKKQMVEKVETFAYHLADIQNPDILQDFMEKLKNWKDDNAI
Nucleotide
Download Length: 954 bp
>NTDB_id=1147510 CKV85_RS10430 WP_095123575.1 2121451..2122404(-) (comYH) [Streptococcus acidominimus strain NCTC11291]
ATGAACTTTGAAAAAATAGAATCGGCTTATCAGTTACTTTTAGAAAATTGTCAGTTGATTGAAAATGAGATAAAAACGAC
CATTTACGATGCCATGATTGAGCAGAATGCCTATTATTTAGGTGCTGAAAATGCTCCTGAAAAAGTGACTGAAAACAATC
AGACATTAGCAGATTTGCATTTGACTGCTGAAGAATGGCGCAGAGCTTATCAGTTTCTTTTTATTAAAGCTGCCCAAACA
GAGCCCTTGCAAGCTAATCACCAGTTCACACCGGATACGATCGGCTTTTTGCTACTGTATTTAGTGGAGACTTTGACTAG
TAAGGAACATTTGGATCTTATTGAGATCGGTAGTGGAACAGGAAATCTAGCGCAAACCATACTCAATAATACCGATCGTA
ACATAGATTATCTGGGCTTGGAGCTAGATGATCTCTTAATTGATCTATCGGCTTCCGTCGCGGAGATTGTCGGCTCATCT
GTTCATTTTTTACAAGAAGATGCGGTACGCCCGCAGATACTGAAAGAGAGTGATGTGATCCTGGGAGATTTACCGGTTGG
TTACTATCCTAATGATGACATCGCTAAGCGCTACCAAGTGGCTGCGTCAGACGGTCATACTTACGCCCATCATCTCTTAA
TGGAACAATCGCTCAAGTACCTAAAGCAAGATGGTTTAGCTATTTTATTAGCACCTACGGATCTGTTAACCAGCGCCCAA
AGCGATCTTTTGAAAACGTGGTTATCTAGCTATGCTAGTATCTTGGCGGTCATTACCTTGCCAGATCATTTATTTGGCAA
TCCCAAAAATGCCAAATCAGTCTTTGTCCTAAAGAAACAGATGGTTGAGAAAGTGGAGACTTTTGCCTATCATTTAGCTG
ATATTCAAAATCCAGATATTTTGCAAGATTTTATGGAAAAATTAAAAAACTGGAAAGATGATAATGCCATTTAA
ATGAACTTTGAAAAAATAGAATCGGCTTATCAGTTACTTTTAGAAAATTGTCAGTTGATTGAAAATGAGATAAAAACGAC
CATTTACGATGCCATGATTGAGCAGAATGCCTATTATTTAGGTGCTGAAAATGCTCCTGAAAAAGTGACTGAAAACAATC
AGACATTAGCAGATTTGCATTTGACTGCTGAAGAATGGCGCAGAGCTTATCAGTTTCTTTTTATTAAAGCTGCCCAAACA
GAGCCCTTGCAAGCTAATCACCAGTTCACACCGGATACGATCGGCTTTTTGCTACTGTATTTAGTGGAGACTTTGACTAG
TAAGGAACATTTGGATCTTATTGAGATCGGTAGTGGAACAGGAAATCTAGCGCAAACCATACTCAATAATACCGATCGTA
ACATAGATTATCTGGGCTTGGAGCTAGATGATCTCTTAATTGATCTATCGGCTTCCGTCGCGGAGATTGTCGGCTCATCT
GTTCATTTTTTACAAGAAGATGCGGTACGCCCGCAGATACTGAAAGAGAGTGATGTGATCCTGGGAGATTTACCGGTTGG
TTACTATCCTAATGATGACATCGCTAAGCGCTACCAAGTGGCTGCGTCAGACGGTCATACTTACGCCCATCATCTCTTAA
TGGAACAATCGCTCAAGTACCTAAAGCAAGATGGTTTAGCTATTTTATTAGCACCTACGGATCTGTTAACCAGCGCCCAA
AGCGATCTTTTGAAAACGTGGTTATCTAGCTATGCTAGTATCTTGGCGGTCATTACCTTGCCAGATCATTTATTTGGCAA
TCCCAAAAATGCCAAATCAGTCTTTGTCCTAAAGAAACAGATGGTTGAGAAAGTGGAGACTTTTGCCTATCATTTAGCTG
ATATTCAAAATCCAGATATTTTGCAAGATTTTATGGAAAAATTAAAAAACTGGAAAGATGATAATGCCATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
65.506 |
99.685 |
0.653 |
| comYH | Streptococcus mutans UA159 |
64.984 |
100 |
0.65 |