Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CKV85_RS06000 Genome accession   NZ_LT906454
Coordinates   1226149..1226991 (-) Length   280 a.a.
NCBI ID   WP_095122769.1    Uniprot ID   -
Organism   Streptococcus acidominimus strain NCTC11291     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1221149..1231991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV85_RS05990 (SAMEA4504048_01281) trmFO 1222235..1223578 (-) 1344 WP_095122767.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  CKV85_RS05995 (SAMEA4504048_01282) topA 1223910..1226021 (-) 2112 WP_017768856.1 type I DNA topoisomerase -
  CKV85_RS06000 (SAMEA4504048_01283) dprA 1226149..1226991 (-) 843 WP_095122769.1 DNA-processing protein DprA Machinery gene
  CKV85_RS06005 (SAMEA4504048_01284) - 1227060..1227611 (-) 552 WP_017768854.1 sugar O-acetyltransferase -
  CKV85_RS06010 (SAMEA4504048_01285) - 1227611..1228393 (-) 783 WP_017768853.1 ribonuclease HII -
  CKV85_RS06015 (SAMEA4504048_01286) ylqF 1228380..1229231 (-) 852 WP_017768852.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31210.15 Da        Isoelectric Point: 8.6700

>NTDB_id=1147486 CKV85_RS06000 WP_095122769.1 1226149..1226991(-) (dprA) [Streptococcus acidominimus strain NCTC11291]
MNHFELYKLKKAGLANHHILNILAYEEKHGKSLSLRDRAVVSKCSNPTTFMENYRQLDNEELRKTFRLFPSISIEDKEYP
MALKEIYNPPVLLFFHGNLELLKKPKIAVVGARKCSDLATKSVQKVIRELNNHFVVVSGLARGIDTAAHLASLKAGGASI
GVIGTGLDVYYPKENKALQDYMMTHHLVLTEYGPGEQPLKYHFPERNRIIAGLCRGVIVAEAKIRSGSLITCERALEEGR
DVFAIPGNILDGKSAGCLHLIQEGAKCITSGFDVLNDYQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=1147486 CKV85_RS06000 WP_095122769.1 1226149..1226991(-) (dprA) [Streptococcus acidominimus strain NCTC11291]
ATGAATCATTTTGAATTATATAAATTAAAGAAAGCTGGCCTAGCGAATCATCATATTCTCAATATCTTGGCCTACGAAGA
AAAACATGGCAAGTCTTTATCCTTAAGAGATCGGGCAGTGGTGTCTAAGTGCTCAAATCCAACGACTTTTATGGAAAATT
ACCGACAGCTTGATAATGAGGAATTGCGCAAAACATTTCGTCTGTTTCCAAGTATTTCAATAGAAGATAAGGAGTATCCC
ATGGCATTAAAGGAAATCTATAATCCACCAGTGTTACTCTTTTTTCACGGGAATCTTGAATTGCTTAAAAAGCCCAAAAT
AGCTGTTGTTGGTGCTCGGAAATGTTCTGATTTGGCGACCAAATCAGTGCAAAAAGTTATCAGAGAGTTGAATAATCACT
TCGTCGTGGTTAGCGGATTGGCCCGTGGGATTGATACAGCGGCTCATCTAGCTAGTCTGAAAGCAGGAGGAGCAAGTATA
GGCGTGATAGGGACAGGTCTAGATGTCTATTACCCAAAGGAAAACAAAGCTTTACAGGACTATATGATGACGCATCATTT
GGTATTAACGGAGTATGGGCCAGGTGAACAGCCACTGAAATACCATTTTCCGGAACGTAACCGTATCATTGCCGGCCTTT
GTCGAGGAGTGATCGTCGCAGAAGCCAAAATTCGTTCAGGTAGCTTGATTACATGTGAGCGTGCTTTGGAGGAAGGAAGA
GATGTTTTTGCCATTCCAGGTAATATTTTGGATGGAAAATCTGCTGGATGCTTACATTTGATTCAAGAGGGGGCGAAGTG
CATTACATCAGGCTTTGATGTCCTAAATGATTATCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Streptococcus mutans UA159

69.286

100

0.693
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

66.071

100

0.661
  dprA/cilB/dalA Streptococcus pneumoniae D39

66.071

100

0.661
  dprA/cilB/dalA Streptococcus pneumoniae R6

66.071

100

0.661
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

66.071

100

0.661
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

65.714

100

0.657
  dprA/cilB/dalA Streptococcus mitis SK321

65.357

100

0.654
  dprA Lactococcus lactis subsp. cremoris KW2

54.286

100

0.543

Multiple sequence alignment