Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CKV79_RS11850 Genome accession   NZ_LT906451
Coordinates   2585638..2586714 (+) Length   358 a.a.
NCBI ID   WP_028372587.1    Uniprot ID   -
Organism   Legionella lansingensis strain NCTC12830     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2580638..2591714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV79_RS11825 (SAMEA44548918_02390) - 2581279..2581767 (-) 489 WP_028372582.1 hypothetical protein -
  CKV79_RS11830 (SAMEA44548918_02391) - 2581853..2582599 (-) 747 WP_028372583.1 CPBP family intramembrane metalloprotease -
  CKV79_RS11835 (SAMEA44548918_02392) rsmB 2582602..2583882 (-) 1281 WP_028372584.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CKV79_RS11840 (SAMEA44548918_02393) fmt 2583879..2584814 (-) 936 WP_081778033.1 methionyl-tRNA formyltransferase -
  CKV79_RS11845 (SAMEA44548918_02394) def 2584979..2585488 (-) 510 WP_028372586.1 peptide deformylase -
  CKV79_RS11850 (SAMEA44548918_02395) dprA 2585638..2586714 (+) 1077 WP_028372587.1 DNA-processing protein DprA Machinery gene
  CKV79_RS11855 (SAMEA44548918_02396) - 2586714..2587139 (+) 426 WP_028372588.1 DUF494 family protein -
  CKV79_RS11860 (SAMEA44548918_02397) topA 2587169..2589445 (+) 2277 WP_028372589.1 type I DNA topoisomerase -
  CKV79_RS13945 (SAMEA44548918_02398) - 2589519..2589887 (-) 369 WP_028372590.1 VOC family protein -
  CKV79_RS11870 (SAMEA44548918_02399) ltaE 2589900..2590931 (-) 1032 WP_035915044.1 low-specificity L-threonine aldolase -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 39071.16 Da        Isoelectric Point: 7.6631

>NTDB_id=1147411 CKV79_RS11850 WP_028372587.1 2585638..2586714(+) (dprA) [Legionella lansingensis strain NCTC12830]
MTNNKPYFIALNKIPFIGPRTIANLWARWPRLEDMFKLSKQQLEKEGLSTRLAESITKFSLNEIETDLCWQETSNQYVLT
WEDPLYPSLLKEIHDPPVVLYARGDLTCLQQPTVAIVGSRKPSILGSETAWRFASGLASHQLTIVSGLALGIDAQAHGGC
LEATGKTIAVMGTGIDQIYPRQHRALADKIQQNGLLLSEFPLKTPPKAGHFPRRNRIISGLSLAILVVESAIKSGSLITA
RLALEQNRDVLAIPGSILNPQARGCHYLLQQGAKLVTSIQDVMDELGLDSKQVIQANPTLSLATDNQNLVKCIGFEITSV
DQIIARSGLGIEEVVSSLATLELQGTIKAVPGGYMRCA

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=1147411 CKV79_RS11850 WP_028372587.1 2585638..2586714(+) (dprA) [Legionella lansingensis strain NCTC12830]
TTGACGAACAACAAACCTTATTTTATCGCACTAAATAAAATTCCTTTTATTGGTCCACGCACTATCGCCAATTTATGGGC
ACGCTGGCCGCGACTGGAAGACATGTTTAAGTTGTCAAAACAGCAACTAGAGAAGGAAGGTCTATCAACTCGACTTGCTG
AGTCCATCACTAAGTTCTCATTGAATGAAATTGAAACAGATTTATGCTGGCAGGAAACGAGTAACCAGTATGTACTCACT
TGGGAAGATCCTCTGTACCCAAGTCTACTGAAAGAAATTCATGATCCTCCAGTCGTGCTTTATGCACGTGGAGATCTCAC
CTGTTTACAACAGCCGACTGTCGCCATTGTTGGTAGCCGTAAACCCTCTATCCTGGGGAGTGAAACTGCATGGCGCTTTG
CCTCTGGTTTGGCTTCTCATCAACTCACCATTGTTAGTGGTCTGGCCTTAGGAATTGATGCTCAAGCTCATGGTGGCTGT
TTAGAAGCGACGGGGAAAACGATTGCGGTCATGGGAACAGGAATTGATCAAATTTATCCTCGTCAACATCGAGCTCTTGC
TGATAAAATCCAGCAAAATGGCTTGTTATTAAGCGAATTTCCTTTAAAAACTCCCCCAAAAGCTGGACATTTTCCACGCA
GAAATCGTATAATAAGTGGTTTATCATTAGCCATCCTGGTTGTTGAGTCGGCAATTAAGAGTGGCTCATTGATCACTGCA
CGACTGGCTCTGGAGCAAAATCGCGACGTCCTGGCTATACCAGGATCGATTCTTAATCCTCAAGCCAGAGGCTGTCACTA
TCTTCTGCAGCAAGGAGCGAAGTTAGTGACTTCAATTCAGGATGTCATGGACGAGTTAGGTCTGGATAGTAAGCAAGTCA
TACAAGCTAACCCAACACTATCCCTTGCCACGGATAACCAAAACCTAGTAAAGTGCATTGGCTTCGAGATAACGAGCGTG
GATCAAATCATTGCACGAAGTGGGTTAGGCATTGAAGAGGTAGTCAGCTCCCTGGCTACATTAGAATTACAAGGGACAAT
TAAAGCAGTTCCTGGTGGCTACATGAGGTGCGCGTAA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(298-353)

DNA recombination-mediator protein A (DNA_processg_A)

(74-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

63.128

100

0.631
  dprA Vibrio cholerae strain A1552

43.213

100

0.436
  dprA Vibrio campbellii strain DS40M4

42.978

99.441

0.427
  dprA Glaesserella parasuis strain SC1401

38.859

100

0.399
  dprA Neisseria meningitidis strain C311

35.025

100

0.385
  dprA Neisseria meningitidis MC58

35.025

100

0.385

Multiple sequence alignment