Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CKV79_RS01310 Genome accession   NZ_LT906451
Coordinates   268338..268805 (-) Length   155 a.a.
NCBI ID   WP_028373304.1    Uniprot ID   -
Organism   Legionella lansingensis strain NCTC12830     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 263338..273805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV79_RS01270 (SAMEA44548918_00255) rplO 263478..263912 (+) 435 WP_028373297.1 50S ribosomal protein L15 -
  CKV79_RS01275 (SAMEA44548918_00256) secY 263915..265243 (+) 1329 WP_028373298.1 preprotein translocase subunit SecY -
  CKV79_RS01280 rpmJ 265263..265376 (+) 114 WP_081778074.1 50S ribosomal protein L36 -
  CKV79_RS01285 (SAMEA44548918_00257) rpsM 265457..265813 (+) 357 WP_028373299.1 30S ribosomal protein S13 -
  CKV79_RS01290 (SAMEA44548918_00258) rpsK 265834..266232 (+) 399 WP_035915538.1 30S ribosomal protein S11 -
  CKV79_RS01295 (SAMEA44548918_00259) rpsD 266248..266868 (+) 621 WP_028373301.1 30S ribosomal protein S4 -
  CKV79_RS01300 (SAMEA44548918_00260) - 266886..267872 (+) 987 WP_035915540.1 DNA-directed RNA polymerase subunit alpha -
  CKV79_RS01305 (SAMEA44548918_00261) rplQ 267889..268272 (+) 384 WP_028373303.1 50S ribosomal protein L17 -
  CKV79_RS01310 (SAMEA44548918_00262) ssb 268338..268805 (-) 468 WP_028373304.1 single-stranded DNA-binding protein Machinery gene
  CKV79_RS01315 (SAMEA44548918_00263) - 268910..270262 (-) 1353 WP_028373305.1 MFS transporter -
  CKV79_RS01320 (SAMEA44548918_00264) fabL 270405..271160 (+) 756 WP_028373306.1 enoyl-[acyl-carrier-protein] reductase FabL -
  CKV79_RS13965 (SAMEA44548918_00265) - 271230..272939 (-) 1710 WP_231950168.1 glycoside hydrolase family 76 protein -
  CKV79_RS01330 (SAMEA44548918_00267) - 273156..273569 (+) 414 WP_028373308.1 acyl carrier protein -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17283.13 Da        Isoelectric Point: 4.8161

>NTDB_id=1147392 CKV79_RS01310 WP_028373304.1 268338..268805(-) (ssb) [Legionella lansingensis strain NCTC12830]
MARGINKVILVGNVGVDPDVRYMPNGNAVTTISLATSETWKDKQTGDKQERTEWHRVVCFNRLGEIAGEYVRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVATDLQMLDSKTGSSSYDDVPVPSQGQQQGGRKPQAVSEAAQNAFDELDDDIPF

Nucleotide


Download         Length: 468 bp        

>NTDB_id=1147392 CKV79_RS01310 WP_028373304.1 268338..268805(-) (ssb) [Legionella lansingensis strain NCTC12830]
ATGGCACGTGGAATCAACAAAGTAATTTTGGTTGGTAATGTTGGGGTAGACCCTGATGTGAGGTATATGCCCAATGGCAA
CGCCGTAACAACCATATCTCTGGCAACAAGTGAAACATGGAAGGATAAGCAGACAGGAGATAAGCAAGAGCGCACTGAAT
GGCACCGTGTTGTATGCTTTAACCGCTTAGGTGAGATTGCCGGTGAATATGTTCGTAAAGGCTCCAAGCTCTATGTCGAA
GGTAGCTTACGCACCCGCAAATGGCAGGATCAACAAGGCCAAGATCGCTACACAACCGAAATCGTTGCTACCGATCTCCA
GATGCTCGATAGCAAAACAGGTTCATCAAGCTATGATGATGTGCCAGTTCCATCTCAAGGACAACAACAAGGTGGTCGTA
AACCCCAAGCAGTATCAGAAGCAGCACAAAACGCTTTTGATGAGTTGGATGATGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.562

100

0.581
  ssb Vibrio cholerae strain A1552

49.143

100

0.555
  ssb Neisseria meningitidis MC58

39.884

100

0.445
  ssb Neisseria gonorrhoeae MS11

38.728

100

0.432
  ssb Latilactobacillus sakei subsp. sakei 23K

32.558

100

0.361

Multiple sequence alignment