Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CKV78_RS08965 Genome accession   NZ_LT906448
Coordinates   1976458..1977987 (-) Length   509 a.a.
NCBI ID   WP_032855716.1    Uniprot ID   -
Organism   Pasteurella dagmatis strain NCTC11617     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1971458..1982987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV78_RS08950 (SAMEA4362423_01831) envC 1971575..1972804 (+) 1230 WP_005765595.1 murein hydrolase activator EnvC -
  CKV78_RS08955 (SAMEA4362423_01832) - 1972801..1973643 (+) 843 WP_005765593.1 divergent polysaccharide deacetylase family protein -
  CKV78_RS08960 (SAMEA4362423_01833) - 1973640..1976222 (-) 2583 WP_005765591.1 TonB-dependent receptor domain-containing protein -
  CKV78_RS08965 (SAMEA4362423_01834) comM 1976458..1977987 (-) 1530 WP_032855716.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CKV78_RS08970 (SAMEA4362423_01835) yihA 1978096..1978713 (-) 618 WP_005765587.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  CKV78_RS08975 (SAMEA4362423_01836) - 1978824..1979693 (+) 870 WP_005765585.1 VirK/YbjX family protein -
  CKV78_RS08980 (SAMEA4362423_01837) trmL 1979776..1980252 (-) 477 WP_005765583.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  CKV78_RS08985 (SAMEA4362423_01838) - 1980373..1981896 (-) 1524 WP_005765581.1 surface lipoprotein assembly modifier -
  CKV78_RS08990 (SAMEA4362423_01839) rsmD 1981993..1982580 (-) 588 WP_005765579.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55977.28 Da        Isoelectric Point: 9.8713

>NTDB_id=1147373 CKV78_RS08965 WP_032855716.1 1976458..1977987(-) (comM) [Pasteurella dagmatis strain NCTC11617]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALLNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGMLAASGQIEPQKLQQFEFVGELALTGDLRGVHGVIPAILAGQKAKRHLIIASQNANEASLVSDQDTYFAQNL
LEVVSFLNNRSNLPLASNITQQSTVNSSQKLQKDLTDIIGQQHAKRALTIAAAGQHNLLLLGPPGTGKTMLASRLTSLLP
EMTDQEAIETASVTSLIHNELNFHNWKQRPFRSPHHSASTPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLIAAMNPSPTGHYQGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGTLQN
QTDRGETSAQVREKVLKVREIQLARAGKINAYLTSKEIERDCRISDKDALFLENALTKLGLSVRAYHRILKVARTIADLN
DEYQIQQTHLAEALGYRAMDRLLQKLTAM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1147373 CKV78_RS08965 WP_032855716.1 1976458..1977987(-) (comM) [Pasteurella dagmatis strain NCTC11617]
ATGTCGCTCGCCATTGTTTATAGCCGCGCTTCTATGGGTGTTCAAGCCCCTTTAGTCACTATTGAGGTACATTTAAGTAA
CGGAAAACCGGGGTTTACCCTTGTAGGCTTGCCTGAAAAAACCGTGAAAGAAGCCCAAGATCGAGTACGCAGCGCCCTAT
TGAATGCACAATTTAAATACCCTGCTAAACGCATCACAGTTAACCTTGCTCCTGCTGATTTACCGAAAGAAGGAGGTCGC
TTTGATTTACCTATTGCAATTGGGATGCTTGCTGCTTCAGGACAAATTGAACCACAAAAATTACAGCAATTTGAATTTGT
TGGGGAATTGGCTTTAACAGGTGATTTGCGTGGTGTACATGGTGTAATTCCTGCTATTCTTGCAGGGCAAAAAGCAAAGC
GCCATTTGATTATAGCCAGTCAAAATGCTAATGAGGCTTCATTAGTTTCCGATCAAGATACTTACTTTGCACAAAATTTA
TTAGAGGTTGTGAGTTTTCTCAATAATCGTTCAAACTTACCTTTGGCATCCAACATTACACAGCAAAGCACAGTGAATTC
TTCCCAAAAACTGCAAAAAGATCTGACCGATATTATTGGTCAACAACACGCTAAACGAGCATTAACTATTGCTGCAGCAG
GGCAACATAATCTGTTGCTTTTGGGTCCACCTGGAACAGGAAAAACAATGCTTGCTAGCCGTTTAACCTCATTGTTACCT
GAAATGACTGACCAAGAGGCAATTGAAACTGCCTCTGTCACTAGCCTTATCCACAATGAATTAAATTTTCATAACTGGAA
ACAGCGCCCTTTTCGCTCTCCACATCACAGTGCTTCAACACCAGCATTAGTGGGAGGGGGAACGATCCCAAAACCAGGCG
AAATATCCCTTGCACACAATGGTGTTTTGTTCCTTGATGAACTGCCCGAATTTGAACGCAAAGTGTTAGATGCCTTACGC
CAACCGCTAGAAAGTGGCGAAATTATTATTTCAAGAGCCAATGCAAAAATTCAATTTCCTGCACGATTTCAATTAATTGC
AGCTATGAACCCGAGCCCAACAGGGCATTATCAAGGCACACATAATCGCACATCGCCACAACAAATTATGCGTTATCTCA
ATCGTTTATCCGGACCGTTTTTAGATCGGTTTGATTTATCTATTGAAGTGCCATTATTACCGCAAGGTACATTACAAAAT
CAAACTGATCGAGGAGAAACTAGTGCACAAGTGCGTGAAAAAGTGCTGAAAGTACGTGAAATTCAACTAGCTCGGGCAGG
TAAAATCAACGCCTACTTAACTAGTAAAGAGATAGAACGAGATTGCAGAATTAGCGATAAAGATGCGTTATTTTTAGAAA
ACGCCTTAACTAAATTAGGGTTATCAGTACGTGCCTATCACCGTATTTTAAAAGTCGCACGAACTATTGCTGATTTAAAT
GATGAATATCAAATTCAACAAACTCATCTTGCTGAAGCCCTTGGTTATCGTGCAATGGATAGACTTTTACAAAAATTAAC
AGCAATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

87.23

100

0.872
  comM Glaesserella parasuis strain SC1401

79.29

99.607

0.79
  comM Vibrio cholerae strain A1552

66.405

100

0.664
  comM Vibrio campbellii strain DS40M4

65.945

99.804

0.658
  comM Legionella pneumophila str. Paris

52

98.232

0.511
  comM Legionella pneumophila strain ERS1305867

52

98.232

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.5

100

0.485

Multiple sequence alignment