Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CKV78_RS01745 Genome accession   NZ_LT906448
Coordinates   362393..363607 (+) Length   404 a.a.
NCBI ID   WP_005764662.1    Uniprot ID   C9PQ19
Organism   Pasteurella dagmatis strain NCTC11617     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 357393..368607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV78_RS01720 (SAMEA4362423_00375) - 357836..358627 (-) 792 WP_005764668.1 sulfite exporter TauE/SafE family protein -
  CKV78_RS01725 (SAMEA4362423_00376) rppH 358630..359229 (-) 600 WP_005764667.1 RNA pyrophosphohydrolase -
  CKV78_RS01730 (SAMEA4362423_00377) ampD 359846..360403 (-) 558 WP_005764666.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  CKV78_RS01735 (SAMEA4362423_00378) pilA 360568..360996 (+) 429 WP_005764664.1 prepilin peptidase-dependent pilin Machinery gene
  CKV78_RS01740 (SAMEA4362423_00379) pilB 360996..362393 (+) 1398 WP_005764663.1 GspE/PulE family protein Machinery gene
  CKV78_RS01745 (SAMEA4362423_00380) pilC 362393..363607 (+) 1215 WP_005764662.1 type II secretion system F family protein Machinery gene
  CKV78_RS01750 (SAMEA4362423_00381) - 363604..364305 (+) 702 WP_005764661.1 A24 family peptidase -
  CKV78_RS01755 (SAMEA4362423_00382) coaE 364399..365010 (+) 612 WP_005764660.1 dephospho-CoA kinase -
  CKV78_RS01760 (SAMEA4362423_00383) yacG 365010..365213 (+) 204 WP_005764659.1 DNA gyrase inhibitor YacG -
  CKV78_RS01765 (SAMEA4362423_00384) - 365213..365482 (+) 270 WP_005764658.1 GNAT family N-acetyltransferase -
  CKV78_RS01770 (SAMEA4362423_00386) - 365881..367254 (+) 1374 WP_005764657.1 sodium:alanine symporter family protein -
  CKV78_RS01775 (SAMEA4362423_00387) raiA 367499..367816 (+) 318 WP_005764656.1 ribosome-associated translation inhibitor RaiA -
  CKV78_RS01780 (SAMEA4362423_00388) aphA 367887..368594 (+) 708 WP_005764655.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 46432.96 Da        Isoelectric Point: 9.5004

>NTDB_id=1147360 CKV78_RS01745 WP_005764662.1 362393..363607(+) (pilC) [Pasteurella dagmatis strain NCTC11617]
MAELKMYRWKAKNRLQQKQKGMLVAENEIMAQQMLFERGFVQIKLQQNWQFSTHPKQAELCDLFTLLATLLQSTLPLKEA
LQALLQNTTNIQLNQWLRNLLMQLESGVAFSVALASLGSYMNYQELQLIKVGEMTGRLAQVCQQIAQYRQQSLVLQRKVQ
KIMLYPSIIVGISLLLTLMLLLFIVPEFAVMYQNQKLPVFTELLFNLSGWLSDNGFLLIILTVLISFGTTYYCRHSKQLQ
QQKERFISVFPLLKDIRQKHRLIRFCTNLHLMLASGIPLHKALQSFLPQQHFGVRSGLQDDPILSNEVRWILQEISQGYA
FSEAASSSLFPYDAQQMLQIGEKSGQFVVMLQNIAEVYQKKLEHQLDLLSQLLEPFLMLIIGGLIGLIMLGMYLPIFNMG
AIVQ

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=1147360 CKV78_RS01745 WP_005764662.1 362393..363607(+) (pilC) [Pasteurella dagmatis strain NCTC11617]
ATGGCAGAGTTAAAGATGTATCGTTGGAAAGCCAAAAATCGTTTACAACAAAAACAGAAAGGAATGTTAGTGGCTGAAAA
TGAAATTATGGCGCAGCAAATGCTGTTTGAGCGGGGCTTTGTTCAGATCAAATTACAACAAAACTGGCAGTTTTCAACGC
ATCCTAAACAAGCTGAACTTTGTGATTTATTTACACTGCTAGCCACTTTACTACAGTCCACATTACCACTGAAAGAGGCG
CTACAAGCTTTGCTACAAAACACAACTAATATTCAACTCAATCAATGGCTTAGAAACTTATTAATGCAATTGGAAAGCGG
TGTTGCTTTTTCTGTGGCCTTGGCTTCACTCGGATCTTATATGAATTATCAAGAATTACAGTTGATTAAAGTAGGAGAAA
TGACTGGTCGTTTGGCGCAAGTTTGTCAACAAATCGCACAATATCGGCAACAATCTTTGGTTTTGCAACGTAAAGTACAA
AAAATTATGCTGTATCCAAGTATTATTGTTGGGATTTCTCTTTTGCTCACATTGATGCTTTTACTGTTTATCGTGCCAGA
ATTTGCTGTAATGTATCAAAATCAAAAACTGCCTGTTTTTACTGAACTGTTATTTAATTTATCTGGATGGCTAAGTGATA
ATGGTTTTTTATTAATTATTCTGACCGTATTAATTAGCTTTGGCACAACGTATTACTGTCGGCACTCTAAGCAACTTCAA
CAACAAAAAGAGCGTTTCATTTCTGTATTTCCTTTACTTAAAGACATTCGCCAGAAGCATCGTTTAATTCGTTTTTGTAC
CAATTTGCATTTAATGCTTGCTTCAGGGATACCATTGCACAAAGCTTTACAGTCTTTTTTACCTCAACAACATTTCGGAG
TGAGAAGTGGATTACAAGATGATCCTATATTAAGCAATGAAGTGCGGTGGATTTTACAAGAAATTTCTCAAGGGTATGCT
TTTTCAGAGGCTGCTAGTTCCTCATTGTTCCCTTATGATGCGCAACAAATGCTACAAATTGGTGAGAAAAGTGGGCAATT
TGTTGTGATGTTACAAAATATTGCAGAGGTATATCAGAAGAAACTAGAACATCAATTAGATTTGCTATCTCAACTGTTAG
AGCCATTTTTAATGTTAATTATCGGCGGATTAATTGGGCTAATTATGCTCGGAATGTATTTACCGATTTTTAATATGGGA
GCTATTGTGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(65-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9PQ19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

53.102

99.752

0.53
  pilC Haemophilus influenzae 86-028NP

52.357

99.752

0.522
  pilC Glaesserella parasuis strain SC1401

39.163

100

0.394

Multiple sequence alignment