Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilQ   Type   Machinery gene
Locus tag   CKW04_RS06215 Genome accession   NZ_LT906442
Coordinates   1317259..1319352 (+) Length   697 a.a.
NCBI ID   WP_058479251.1    Uniprot ID   -
Organism   Legionella waltersii strain NCTC13017     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1312259..1324352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW04_RS06195 (SAMEA4504053_01263) pilM 1314506..1315570 (+) 1065 WP_058479248.1 type IV pilus assembly protein PilM Machinery gene
  CKW04_RS06200 (SAMEA4504053_01264) pilN 1315575..1316123 (+) 549 WP_058479281.1 PilN domain-containing protein Machinery gene
  CKW04_RS06205 (SAMEA4504053_01265) pilO 1316135..1316734 (+) 600 WP_058479249.1 type 4a pilus biogenesis protein PilO Machinery gene
  CKW04_RS06210 (SAMEA4504053_01266) pilP 1316734..1317255 (+) 522 WP_408607318.1 pilus assembly protein PilP Machinery gene
  CKW04_RS06215 (SAMEA4504053_01267) pilQ 1317259..1319352 (+) 2094 WP_058479251.1 type IV pilus secretin PilQ Machinery gene
  CKW04_RS06220 (SAMEA4504053_01268) aroK 1319695..1320222 (+) 528 WP_058479252.1 shikimate kinase AroK -
  CKW04_RS06225 (SAMEA4504053_01269) aroB 1320209..1321312 (+) 1104 WP_058479253.1 3-dehydroquinate synthase -
  CKW04_RS06230 (SAMEA4504053_01270) - 1321315..1322751 (+) 1437 WP_058479254.1 AAA family ATPase -
  CKW04_RS06235 (SAMEA4504053_01271) - 1322844..1323275 (+) 432 WP_058479255.1 universal stress protein -

Sequence


Protein


Download         Length: 697 a.a.        Molecular weight: 77342.44 Da        Isoelectric Point: 9.5091

>NTDB_id=1147230 CKW04_RS06215 WP_058479251.1 1317259..1319352(+) (pilQ) [Legionella waltersii strain NCTC13017]
MRKIIAIIILISASFGMAYAEDNSLVAIKFSPLPENRVRIDFQFKSPLKQLPASFITQKPARLVLDFINAKMDLPADQKM
KVVKLGSLNQYNIVSVGDRVRAILDLDRSVAYSGSTSGAVYSLVLNGKSNDLFENTKEIFITNQQVSAKHEIQKVDFRGI
DKEGGRVFIDVSDTGIPIDVTQVGKEITVNFLNTKIPTNLMKRYDVSDFHSPVQIITMQQEGKKVRMTILSKGDYGHYVY
QVNKQFMVDVFPLSAEEIRQAKLKKQVFTGKRISLNFQNINIRAVLQLLADFTGINMVVSDKVQGEITLRLNDIPWDQAL
DIILTTQGLDKRRKGDVMLIDTKVSLDKMEEDELKSQQTIQKLEPIRSDLLQINYAKASDIAILIKDKQNSLLSDKGKIS
VDARTNTIWIQDTGTKIEEVRELIKQLDIPVKQVLIESRIVEVTKDFSQDIGIRWGISKPTHLSGTLEGANQLARGTAPA
NVTPLTQRLNLDLAAAPVAGNPASVGIALARLSDNILLDLELSALESEGLAELISSPRLITTNQQAAVIESGQEIPYQQA
TSSGATAVAFKKAVLSLKVTPQITPDGKILMELQINQDRPSAQTFLGVPAILTKEIQTNVLVSNGQTIVLGGIYRQDKNK
SLDRIPFFGELPVVGPMFRRKQLTLHNEELLIFITPRIITNSLSITTIEGQEKGTYK

Nucleotide


Download         Length: 2094 bp        

>NTDB_id=1147230 CKW04_RS06215 WP_058479251.1 1317259..1319352(+) (pilQ) [Legionella waltersii strain NCTC13017]
GTGCGAAAAATAATCGCTATAATCATTTTAATTAGTGCCAGTTTTGGGATGGCCTATGCTGAAGATAACTCATTAGTTGC
AATTAAGTTTTCCCCTTTACCAGAGAATAGGGTCCGTATAGATTTTCAATTCAAGTCTCCCCTAAAACAATTACCAGCCA
GCTTTATAACTCAGAAGCCCGCACGCTTAGTGTTGGATTTTATCAATGCAAAAATGGATTTACCTGCAGACCAGAAAATG
AAAGTCGTTAAACTTGGCTCATTAAATCAATACAATATTGTATCTGTTGGTGACCGAGTAAGGGCTATTTTAGATTTGGA
TCGCTCAGTTGCCTACTCGGGTAGTACCTCAGGAGCCGTCTATAGTTTGGTATTGAACGGCAAAAGTAATGATTTATTTG
AAAATACCAAAGAAATATTTATAACAAACCAACAAGTCAGTGCAAAACATGAAATACAGAAGGTTGATTTCAGGGGAATA
GATAAAGAGGGTGGTAGGGTGTTTATTGATGTTTCTGATACGGGTATCCCTATCGATGTGACCCAAGTCGGGAAAGAAAT
TACTGTAAATTTCTTAAATACTAAAATACCTACAAATTTAATGAAACGTTATGACGTCTCAGACTTCCATAGTCCAGTGC
AGATTATAACAATGCAACAAGAAGGGAAGAAAGTACGTATGACCATTCTTAGTAAGGGTGATTATGGTCATTATGTGTAT
CAAGTAAACAAGCAGTTTATGGTAGATGTCTTTCCTTTATCTGCAGAGGAAATTCGTCAAGCTAAACTCAAGAAACAAGT
ATTTACTGGTAAGCGCATTTCTTTAAATTTCCAAAATATAAACATCCGCGCTGTGTTGCAACTCCTGGCTGATTTTACAG
GTATCAATATGGTTGTAAGCGATAAAGTTCAAGGCGAAATTACTTTACGCTTAAACGATATACCTTGGGATCAAGCTCTA
GATATCATCTTAACGACTCAAGGTCTAGATAAACGTAGAAAGGGTGATGTCATGTTGATTGACACTAAGGTCTCTCTAGA
TAAAATGGAAGAGGATGAGCTGAAGAGTCAACAGACGATACAAAAACTAGAGCCGATTCGATCTGATTTATTGCAAATCA
ATTACGCGAAGGCGTCTGATATTGCAATACTCATCAAAGACAAACAAAACTCTTTATTGTCTGATAAAGGGAAAATTAGT
GTGGATGCCCGAACAAATACAATTTGGATACAGGATACTGGAACTAAAATCGAAGAGGTTCGCGAACTGATTAAACAGCT
CGATATACCCGTGAAGCAAGTTCTTATTGAGTCACGAATCGTTGAGGTAACTAAAGACTTTAGCCAAGACATTGGGATTC
GCTGGGGTATCTCCAAGCCCACACATCTCAGCGGTACTTTAGAGGGTGCTAACCAGTTAGCAAGAGGTACAGCCCCAGCT
AACGTAACTCCATTAACTCAACGGTTAAATCTTGACCTAGCTGCAGCGCCAGTAGCGGGCAATCCTGCATCGGTAGGTAT
AGCCCTTGCTCGATTGAGTGATAACATATTGCTTGACTTGGAGTTATCTGCATTAGAAAGTGAGGGCCTTGCGGAATTAA
TTTCCAGCCCTCGCTTGATTACCACTAACCAACAAGCAGCAGTTATTGAATCAGGACAGGAGATACCTTATCAACAAGCA
ACGTCTAGTGGAGCTACGGCAGTTGCGTTTAAAAAAGCTGTTCTTAGCCTTAAAGTCACACCACAAATTACTCCTGATGG
TAAAATTCTGATGGAACTACAAATCAATCAAGATAGGCCTTCGGCACAGACATTCCTCGGTGTACCGGCCATTTTGACGA
AAGAAATTCAAACCAACGTTTTGGTAAGTAATGGTCAAACTATTGTTCTTGGTGGCATCTATCGACAAGATAAAAATAAA
TCACTTGATCGAATTCCCTTTTTTGGTGAGTTACCTGTTGTTGGCCCTATGTTTAGAAGAAAACAGTTAACTTTGCACAA
TGAGGAGTTGCTCATTTTTATAACTCCAAGGATAATAACAAATTCATTATCAATAACAACAATTGAAGGTCAGGAAAAAG
GAACGTATAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain Lp02

86.676

100

0.868

  pilQ Legionella pneumophila strain ERS1305867

86.533

100

0.867

  comQ Acinetobacter baylyi ADP1

39.359

98.422

0.387

  pilQ Pseudomonas aeruginosa PAK

36.842

100

0.372


Multiple sequence alignment