Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CKV83_RS08020 Genome accession   NZ_LT906439
Coordinates   1726435..1726920 (-) Length   161 a.a.
NCBI ID   WP_018373683.1    Uniprot ID   A0A239SWW6
Organism   Streptococcus merionis strain NCTC13788     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1721435..1731920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV83_RS07995 (SAMEA4412692_01597) - 1722944..1723891 (+) 948 WP_018373679.1 magnesium transporter CorA family protein -
  CKV83_RS08000 (SAMEA4412692_01598) - 1723927..1724592 (+) 666 WP_018373680.1 DUF1129 domain-containing protein -
  CKV83_RS11610 (SAMEA4412692_01599) - 1724644..1724961 (-) 318 WP_018373681.1 hypothetical protein -
  CKV83_RS08010 (SAMEA4412692_01600) - 1725076..1726047 (-) 972 WP_018373682.1 aromatic acid exporter family protein -
  CKV83_RS08015 (SAMEA4412692_01601) rpsR 1726122..1726361 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  CKV83_RS08020 (SAMEA4412692_01602) ssbA 1726435..1726920 (-) 486 WP_018373683.1 single-stranded DNA-binding protein Machinery gene
  CKV83_RS08025 (SAMEA4412692_01603) rpsF 1726932..1727222 (-) 291 WP_018373684.1 30S ribosomal protein S6 -
  CKV83_RS08030 (SAMEA4412692_01604) - 1727552..1727788 (+) 237 WP_018373685.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  CKV83_RS08035 (SAMEA4412692_01605) - 1727815..1728027 (+) 213 WP_018373686.1 CsbD family protein -
  CKV83_RS08040 (SAMEA4412692_01606) - 1728067..1728711 (-) 645 WP_018373687.1 YitT family protein -
  CKV83_RS08045 (SAMEA4412692_01607) - 1728907..1730394 (-) 1488 WP_018373688.1 glycoside hydrolase family 1 protein -
  CKV83_RS08050 (SAMEA4412692_01608) - 1730398..1731882 (-) 1485 WP_018373689.1 glycoside hydrolase family 1 protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17882.64 Da        Isoelectric Point: 4.9008

>NTDB_id=1147143 CKV83_RS08020 WP_018373683.1 1726435..1726920(-) (ssbA) [Streptococcus merionis strain NCTC13788]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQLLESRTAREGQSGGYQSNANFGGGFQSAPSQSNATPNFGRDESPFGTTNPMDISDDDLP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=1147143 CKV83_RS08020 WP_018373683.1 1726435..1726920(-) (ssbA) [Streptococcus merionis strain NCTC13788]
ATGATTAATAATGTAGTGCTTGTTGGTCGTATGACCCGTGATGCAGAGCTTCGCTATACCCCGTCTAACCAAGCTGTGGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAACGTGAGGCGGATTTCATTAACGTGGTTATTT
GGCGCCAGCAGGCTGAAAACTTGGCTAACTGGGCTAAAAAAGGTGCCTTGATTGGGATTACAGGTCGCATTCAGACTCGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACAGAAGTTGTTGCTGATAATTTCCAACTCTTGGAAAGTCGCAC
TGCGCGTGAAGGTCAATCAGGTGGTTACCAGTCCAATGCCAATTTTGGCGGCGGTTTCCAATCAGCTCCTTCACAATCAA
ACGCAACACCTAACTTTGGTCGTGATGAAAGCCCATTTGGCACAACCAATCCAATGGACATTTCAGACGACGATCTGCCT
TTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239SWW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.742

100

0.627
  ssb Latilactobacillus sakei subsp. sakei 23K

59.412

100

0.627
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

67.702

0.373
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

65.839

0.366
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.211

67.702

0.36

Multiple sequence alignment