Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CKW10_RS02985 Genome accession   NZ_LT906435
Coordinates   657662..658174 (+) Length   170 a.a.
NCBI ID   WP_039395618.1    Uniprot ID   A0A5E4WVR7
Organism   Pandoraea sputorum strain NCTC13161     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 652662..663174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW10_RS02975 (SAMEA4530655_00595) uvrA 653083..655947 (-) 2865 WP_039395612.1 excinuclease ABC subunit UvrA -
  CKW10_RS02980 (SAMEA4530655_00596) - 656468..657631 (+) 1164 WP_039395615.1 MFS transporter -
  CKW10_RS02985 (SAMEA4530655_00597) ssb 657662..658174 (+) 513 WP_039395618.1 single-stranded DNA-binding protein Machinery gene
  CKW10_RS02990 - 658667..658903 (-) 237 WP_039395621.1 helix-turn-helix domain-containing protein -
  CKW10_RS25985 (SAMEA4530655_00599) - 659863..659997 (+) 135 WP_257125715.1 hypothetical protein -
  CKW10_RS03000 (SAMEA4530655_00601) - 660610..661419 (+) 810 WP_052252472.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  CKW10_RS03005 (SAMEA4530655_00602) - 661430..662617 (+) 1188 WP_039395624.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 17831.56 Da        Isoelectric Point: 5.3258

>NTDB_id=1146955 CKW10_RS02985 WP_039395618.1 657662..658174(+) (ssb) [Pandoraea sputorum strain NCTC13161]
MASVNKVILVGNLGADPEVRYMPSGDAVANIRLATTDRYKDKQSGEFKEMTEWHRVSFFGRLAEIVNEYLKKGSSVYIEG
RIRTRKYQAQDGTERYSTEIVADQMQMLGGRSGGGEGGGGGGYSRGGGGDEGGGGGYSRGGGGGGGGARQQAPAKQSGGG
FDDMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1146955 CKW10_RS02985 WP_039395618.1 657662..658174(+) (ssb) [Pandoraea sputorum strain NCTC13161]
ATGGCATCAGTCAACAAAGTGATTCTGGTCGGCAATCTGGGTGCCGACCCCGAAGTCCGCTACATGCCGAGCGGCGATGC
GGTTGCGAACATTCGTCTGGCGACGACAGACCGTTACAAGGACAAGCAGTCCGGCGAATTCAAGGAAATGACGGAATGGC
ACCGTGTGTCGTTCTTCGGCCGTCTGGCTGAGATCGTCAACGAGTACCTGAAGAAGGGTTCGTCGGTGTATATCGAAGGC
CGTATCCGTACGCGCAAGTACCAGGCGCAGGACGGCACGGAGCGCTACAGCACGGAAATCGTGGCTGACCAGATGCAGAT
GCTGGGTGGCCGTAGCGGCGGCGGCGAAGGTGGCGGCGGTGGCGGCTACTCGCGCGGCGGTGGTGGTGACGAAGGCGGTG
GCGGCGGTTACTCGCGAGGCGGTGGTGGTGGCGGCGGCGGTGCCCGTCAGCAAGCCCCGGCCAAGCAGTCCGGCGGCGGC
TTCGACGACATGGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E4WVR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.111

100

0.541
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.524
  ssb Neisseria meningitidis MC58

45.763

100

0.476
  ssb Neisseria gonorrhoeae MS11

45.763

100

0.476
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.64

100

0.394

Multiple sequence alignment