Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CKW10_RS02370 Genome accession   NZ_LT906435
Coordinates   524789..526369 (-) Length   526 a.a.
NCBI ID   WP_039402102.1    Uniprot ID   A0A239S7U4
Organism   Pandoraea sputorum strain NCTC13161     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 519789..531369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKW10_RS02345 (SAMEA4530655_00469) - 520272..521621 (+) 1350 WP_039402096.1 sigma-54 dependent transcriptional regulator -
  CKW10_RS02350 (SAMEA4530655_00470) - 521683..522345 (-) 663 WP_224786738.1 carbonic anhydrase -
  CKW10_RS02355 (SAMEA4530655_00471) - 522741..523265 (-) 525 WP_039395336.1 TlpA disulfide reductase family protein -
  CKW10_RS25790 (SAMEA4530655_00472) - 523362..524093 (-) 732 WP_224786737.1 hypothetical protein -
  CKW10_RS02365 (SAMEA4530655_00473) - 524191..524739 (+) 549 WP_052252454.1 hypothetical protein -
  CKW10_RS02370 (SAMEA4530655_00474) comM 524789..526369 (-) 1581 WP_039402102.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CKW10_RS02375 (SAMEA4530655_00475) - 526798..527046 (-) 249 WP_039395339.1 accessory factor UbiK family protein -
  CKW10_RS02380 (SAMEA4530655_00476) - 527442..528287 (+) 846 WP_039395342.1 TorF family putative porin -
  CKW10_RS02385 (SAMEA4530655_00477) - 528301..528639 (+) 339 WP_010804740.1 P-II family nitrogen regulator -
  CKW10_RS02390 (SAMEA4530655_00478) amt 528665..530200 (+) 1536 WP_039395345.1 ammonium transporter -

Sequence

Protein


Download         Length: 526 a.a.        Molecular weight: 55372.31 Da        Isoelectric Point: 7.8704

>NTDB_id=1146953 CKW10_RS02370 WP_039402102.1 524789..526369(-) (comM) [Pandoraea sputorum strain NCTC13161]
MSLAVVSSRAITGMSARPVTVEVHLANGLPGLSLVGLPDTEVKESRERVRSALQNSRFEFPARRITVNLAPADLPKASGC
FDLPIALGILAASGQLPEAGLRTHEFAGELSLTGELRPIRGGLAMASAMASEPSTRALVLPAGSAQEAALVEEATVYGAR
ALLDVCAHLAAPDVAIPLPRAVVQGSPNDRAADTAGGELDVARVSAPGATPPGSSIADMIDIKGQEHAKRALEVAAAGGH
HLLLCGPPGTGKSMLATRLVGLLPSLCKSQAVEAATLASLSAQGFDMRHWGRRPFRAPHHTASAAALVGGGSTPRPGEIS
LAHRGVLFLDELPEFQRRVLEVLREPLELGHVTISRAGGHATFPAAFQLVAAMNPCPCGDLGHPSRNCRCTSDAVARYRN
RLSGPLLDRIDLHVEVPALSAETFAAPATGERTEVVAMRVRHAQTRQLKRQGQLNCGLSNRALEAQCPLGPAAQEVLHRA
VTQHHWSARTYHRVLRVARTVADLAECDAIDASHIAEAVQYREAPT

Nucleotide


Download         Length: 1581 bp        

>NTDB_id=1146953 CKW10_RS02370 WP_039402102.1 524789..526369(-) (comM) [Pandoraea sputorum strain NCTC13161]
ATGTCATTGGCAGTGGTGAGCAGCCGCGCGATCACCGGTATGTCGGCACGTCCGGTGACAGTCGAAGTCCATCTGGCGAA
CGGCTTGCCGGGATTGTCGCTGGTGGGGCTGCCCGATACCGAAGTGAAGGAAAGTCGCGAGCGGGTGCGCTCGGCGTTGC
AGAACAGCCGGTTTGAATTCCCAGCGCGACGCATCACCGTCAATCTGGCCCCGGCCGATCTGCCGAAGGCGTCGGGCTGT
TTTGATCTACCGATTGCGCTCGGCATTCTGGCGGCGAGCGGTCAGTTACCGGAGGCCGGGTTGCGCACGCACGAGTTCGC
GGGCGAGTTGTCGCTTACCGGCGAGTTGCGCCCTATTCGCGGTGGCCTGGCGATGGCGAGCGCGATGGCATCGGAGCCGT
CGACACGCGCGCTCGTGCTTCCCGCCGGGAGCGCACAAGAAGCTGCGCTGGTGGAGGAAGCCACGGTCTATGGCGCACGC
GCTTTACTCGACGTCTGCGCCCACCTCGCGGCGCCGGATGTCGCGATACCGCTCCCACGTGCCGTGGTGCAGGGTTCGCC
TAACGACAGGGCAGCGGACACAGCGGGGGGCGAACTCGACGTCGCGCGAGTCAGCGCGCCGGGCGCCACGCCCCCGGGCA
GCAGCATCGCGGACATGATCGACATCAAAGGGCAGGAGCACGCCAAACGAGCGCTGGAAGTGGCGGCGGCGGGTGGCCAT
CACCTTTTGCTTTGCGGGCCACCCGGCACGGGCAAATCGATGCTCGCGACGCGGCTCGTCGGCCTGTTGCCGTCGCTCTG
CAAATCGCAGGCCGTGGAAGCGGCAACGCTCGCAAGTCTGAGCGCGCAGGGCTTCGATATGCGGCATTGGGGACGCCGGC
CCTTTCGTGCGCCGCATCACACGGCATCGGCGGCGGCCCTTGTGGGGGGCGGGAGCACGCCGCGACCGGGGGAAATCAGT
CTGGCGCATCGCGGCGTGCTGTTCCTCGACGAACTGCCGGAATTTCAGCGTCGTGTCCTGGAAGTGCTGCGTGAACCACT
GGAACTGGGGCATGTCACGATTTCGCGCGCCGGTGGGCATGCGACGTTTCCCGCGGCATTTCAACTGGTGGCGGCAATGA
ACCCGTGTCCCTGCGGTGACCTGGGGCACCCGTCACGCAACTGCCGATGCACGAGTGACGCGGTAGCGCGTTACCGCAAC
CGGCTCTCCGGGCCGTTGCTCGACCGCATCGACCTGCACGTGGAAGTGCCTGCACTCAGCGCGGAAACATTCGCCGCTCC
AGCCACCGGCGAGCGCACTGAAGTCGTGGCCATGCGAGTACGACATGCGCAGACGCGCCAGCTAAAGCGTCAGGGTCAGT
TGAACTGCGGTCTGTCGAATCGTGCGCTGGAAGCGCAATGTCCACTGGGACCGGCGGCGCAGGAGGTGCTGCACCGTGCG
GTGACGCAACACCATTGGTCGGCCCGCACCTACCACCGGGTGTTGCGCGTGGCACGCACTGTGGCGGACCTCGCAGAATG
CGACGCAATCGATGCGTCTCACATCGCCGAGGCGGTGCAGTATCGAGAAGCGCCGACGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-522)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(218-422)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239S7U4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.052

99.43

0.508
  comM Vibrio campbellii strain DS40M4

48.948

99.43

0.487
  comM Glaesserella parasuis strain SC1401

48.282

99.62

0.481
  comM Haemophilus influenzae Rd KW20

48.19

99.81

0.481
  comM Legionella pneumophila str. Paris

47.429

99.81

0.473
  comM Legionella pneumophila strain ERS1305867

47.429

99.81

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.81

99.81

0.437

Multiple sequence alignment