Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CKV66_RS11610 Genome accession   NZ_LT906434
Coordinates   2466149..2467639 (-) Length   496 a.a.
NCBI ID   WP_085363538.1    Uniprot ID   A0AB38DUR0
Organism   Neisseria zoodegmatis strain NCTC12230     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2461149..2472639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV66_RS11580 (SAMEA4504057_02267) rplU 2461267..2461575 (+) 309 WP_095197892.1 50S ribosomal protein L21 -
  CKV66_RS11585 (SAMEA4504057_02268) rpmA 2461595..2461867 (+) 273 WP_085363543.1 50S ribosomal protein L27 -
  CKV66_RS11590 (SAMEA4504057_02269) ubiM 2462175..2463359 (+) 1185 WP_085363542.1 5-demethoxyubiquinol-8 5-hydroxylase UbiM -
  CKV66_RS11595 (SAMEA4504057_02270) - 2463572..2464399 (-) 828 WP_085363541.1 undecaprenyl-diphosphate phosphatase -
  CKV66_RS11600 (SAMEA4504057_02271) - 2464470..2465186 (-) 717 WP_085363540.1 thiol:disulfide interchange protein DsbA/DsbL -
  CKV66_RS11605 (SAMEA4504057_02272) - 2465203..2466036 (-) 834 WP_085363539.1 SPOR domain-containing protein -
  CKV66_RS11610 (SAMEA4504057_02273) comM 2466149..2467639 (-) 1491 WP_085363538.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CKV66_RS11615 (SAMEA4504057_02274) - 2467655..2467936 (-) 282 WP_085363537.1 accessory factor UbiK family protein -
  CKV66_RS11620 (SAMEA4504057_02275) - 2468053..2469465 (-) 1413 WP_220182130.1 amino acid permease -
  CKV66_RS11625 (SAMEA4504057_02276) - 2469705..2471447 (-) 1743 WP_085363535.1 bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase -
  CKV66_RS11630 (SAMEA4504057_02277) - 2471519..2472139 (-) 621 WP_085363534.1 DUF2238 domain-containing protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53720.54 Da        Isoelectric Point: 7.8277

>NTDB_id=1146952 CKV66_RS11610 WP_085363538.1 2466149..2467639(-) (comM) [Neisseria zoodegmatis strain NCTC12230]
MSLALVYSRALNGMNAPLVEVEAHLANGLPAFNIVGLPDTEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQIAPDKLNQYEFAGELALSGALRPVRGALAMAWQGMQSGRAFVLPGENARQAAVMKNITVYGAENL
CKVAAHLNGVEPLAQTVYDISQRPSENRHVPDLKDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPGILPPL
TDEELIEVWSLRSLLPNHRQELDYDKPYNSPHHTASQVAIVGGSSGPGEISLSHNGILFLDELPEFDRKVLEVLREPLEN
GEIHISRASHKAVYPAKFQLVAAMNPCPCGYFGHPSKPCRCTPESIARYRGKISGPLLDRIDLTIEVPALSSAELTQQEP
GESSAEVRRRVEAARGRQYQRQGKINAALSVTELDNAAMASKEAAETLGSLLEKLSLSARSYHRIMRVARTLADLNGDET
VTKQHVLRAVSFRRAL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1146952 CKV66_RS11610 WP_085363538.1 2466149..2467639(-) (comM) [Neisseria zoodegmatis strain NCTC12230]
ATGTCGCTCGCCCTTGTTTACAGCCGTGCGCTAAACGGTATGAATGCGCCGTTGGTCGAGGTGGAAGCCCACCTTGCCAA
CGGCTTGCCTGCTTTTAATATCGTCGGCTTGCCCGATACCGAAGTTAAAGAAAGCCGCGACCGCGTCCGCGCCGCCATCA
TCCAAAGCGGATTCGAATTTCCCGCCAAAAAAATTACCGTCAATCTCGCCCCTGCCGATTTACCCAAAGAATCCGGCCGT
TTCGACCTGCCGATCGCGCTCGGCATTCTTGCCGCTTCCGGTCAAATTGCACCCGATAAACTGAACCAATACGAGTTTGC
CGGCGAATTGGCGCTGTCCGGCGCTTTACGTCCCGTCCGCGGCGCACTGGCTATGGCGTGGCAGGGTATGCAGTCCGGCA
GAGCATTTGTTTTACCGGGTGAAAACGCCCGACAAGCGGCGGTGATGAAAAACATCACCGTTTACGGCGCCGAAAATCTG
TGCAAGGTTGCCGCCCATCTGAACGGCGTTGAGCCGCTGGCCCAAACTGTTTACGATATCAGCCAAAGGCCGTCTGAAAA
TCGTCATGTGCCTGATTTGAAAGACGTGAAAGGCCAACATACCGCACGTTTGGCTTTGGAAATTGCCGCTGCCGGCGGGC
ACAGTCTGCTGATGATGGGGCCGCCCGGTACAGGTAAATCCATGCTCGCCCAACGCTTGCCCGGTATTTTGCCGCCGCTG
ACCGATGAAGAATTGATTGAAGTGTGGTCGTTGCGTTCGCTGCTGCCGAACCACAGGCAGGAATTAGATTACGATAAGCC
ATATAATTCTCCTCATCATACTGCCAGTCAAGTAGCCATCGTAGGCGGAAGTTCGGGTCCCGGAGAAATCTCGTTATCGC
ACAACGGAATTTTATTTTTAGATGAACTTCCCGAGTTTGACCGCAAGGTTTTGGAGGTGTTGCGGGAGCCTCTCGAAAAT
GGCGAAATCCATATTTCCCGCGCCTCACATAAAGCGGTGTATCCTGCCAAATTCCAATTGGTCGCCGCCATGAACCCATG
TCCGTGCGGGTATTTCGGCCATCCTTCCAAACCGTGCCGATGCACGCCGGAAAGTATTGCTCGTTACCGTGGAAAAATCT
CAGGGCCTTTGCTCGACCGCATTGATTTAACCATTGAAGTGCCGGCACTTTCTTCCGCCGAACTGACACAGCAGGAACCG
GGCGAAAGCAGCGCAGAAGTGCGCCGACGGGTGGAAGCCGCAAGAGGACGCCAATATCAACGGCAGGGTAAGATTAATGC
GGCGTTAAGCGTTACGGAACTGGATAACGCGGCAATGGCCTCTAAGGAGGCTGCGGAAACTTTAGGGAGTTTATTGGAAA
AGTTGTCGCTGTCTGCTCGCAGTTATCACCGCATCATGCGCGTGGCACGCACTTTGGCAGACTTAAACGGCGATGAAACC
GTGACCAAACAGCATGTGTTACGCGCAGTAAGTTTTCGTCGGGCTTTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.515

100

0.526
  comM Vibrio campbellii strain DS40M4

51.71

100

0.518
  comM Haemophilus influenzae Rd KW20

50.199

100

0.508
  comM Glaesserella parasuis strain SC1401

49.402

100

0.5
  comM Legionella pneumophila str. Paris

45.941

100

0.468
  comM Legionella pneumophila strain ERS1305867

45.941

100

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.96

100

0.448

Multiple sequence alignment