Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NBC2815_RS01270 Genome accession   NZ_LT853880
Coordinates   279060..280580 (-) Length   506 a.a.
NCBI ID   WP_088060886.1    Uniprot ID   -
Organism   Xanthomonas fragariae strain NBC2815     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 274060..285580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBC2815_RS01245 (NBC2815_00231) - 274376..275500 (+) 1125 WP_002809593.1 acyl-CoA desaturase -
  NBC2815_RS01250 (NBC2815_00232) - 275706..277268 (-) 1563 WP_002809597.1 EAL domain-containing protein -
  NBC2815_RS01255 (NBC2815_00233) - 277650..277826 (+) 177 WP_002809598.1 hypothetical protein -
  NBC2815_RS01260 (NBC2815_00234) - 278131..278640 (-) 510 WP_040762726.1 lipocalin family protein -
  NBC2815_RS01270 (NBC2815_00235) comM 279060..280580 (-) 1521 WP_088060886.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NBC2815_RS01275 (NBC2815_00236) - 280596..280874 (-) 279 WP_002809601.1 accessory factor UbiK family protein -
  NBC2815_RS01280 (NBC2815_00237) - 281028..281402 (+) 375 WP_197493710.1 P-II family nitrogen regulator -
  NBC2815_RS01285 (NBC2815_00238) - 281999..283978 (+) 1980 WP_002809603.1 beta-N-acetylglucosaminidase domain-containing protein -
  NBC2815_RS01290 - 284138..284447 (+) 310 Protein_246 hypothetical protein -
  NBC2815_RS01295 (NBC2815_00240) - 284655..285254 (+) 600 WP_088060887.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53796.50 Da        Isoelectric Point: 8.1526

>NTDB_id=1146414 NBC2815_RS01270 WP_088060886.1 279060..280580(-) (comM) [Xanthomonas fragariae strain NBC2815]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAVLLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCAALNGTQQAPAAEVAILAPGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAAALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
VGEDSASVRARVVAARERQLARATVPNAQLDQADTDRHCRLQGDDQLLLERAIEHLQLSARSMHRILRVARTIADLDDSA
GIATRHLTEAIGYRKLDRTLSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1146414 NBC2815_RS01270 WP_088060886.1 279060..280580(-) (comM) [Xanthomonas fragariae strain NBC2815]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGGGTGCATGCGCCTGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGCCTCCCTTCCACCCAGATCGTGGGTCTGCCCGAGGCCGCGGTGCGTGAGTCGCGCGAACGCGTACGTGCGGTATTGC
TGTGCGCACAGTTCGAATTCCCGGCCCGGCGCATCACCATCAACCTGGCGCCAGCCGATTTGCCGAAGGAAGGCGGCCGC
TTCGACTTGCCGATCGCGCTCGGCATCCTGGCCGCCAGCGGGCAGATCGACCGGCAAGCGTTGGCCGACTACGAATTTCT
AGGCGAGCTTGCACTCACCGGCGAGTTACGCGGCGTCGATGGGGTGCTGCCTGCCGCTTTGGCAGCCGCGCAGGCCGGGC
GAAGGTTGATCGTGCCGCTGGCCAATGGCGCCGAAGCCGCGATCGCCGGGCATGTGGAAGCCTTCACCGCGCGCACCTTG
CTGGAAGTCTGCGCCGCACTCAACGGCACTCAGCAAGCGCCAGCGGCAGAGGTGGCGATCCTGGCGCCAGGCGCACGTGC
CCTACCGGATATGGCCGATGTGCGCGGCCAACCGCATGCGCGTCGCGCGTTGGAGATTGCCGCAGCAGGAGGTCACCACC
TGCTGCTGGTCGGCAGCCCCGGGTGCGGCAAGACCTTGCTCGCCTCACGCCTGCCTGGGCTGCTGCCGGAAGCCAGCGAA
GCCGAAGCGCTGGAGACTGCCGCCATCACCTCGATCAGCGGCCGCGGGCTGGATCTCGCCCGCTGGCGACAGCGGCCCTA
TCGCGCGCCCCATCACACCGCCAGTGCGGCCGCTTTGGTCGGTGGTGGCACCCATCCGCGTCCCGGCGAGATCTCCCTGG
CCCACAACGGCGTGCTGTTTTTGGATGAGCTGCCCGAGTGGCAACGGCAGACCTTGGAAGTGCTGCGCGAGCCGCTGGAG
TCGGGCCTAGTCACCATCTCGCGCGCTGCGCGCAGTGTGGATTTCCCGGCTCGTTTCCAACTAGTTGCTGCGATGAACCC
CTGCCCATGTGGCTGGGCCGGTGATGGCAGCGGGCGTTGCCGCTGCAGCAGCGACAGTATTCGTCGCTATCGCAGCCGTA
TCTCTGGTCCATTGCTGGACCGTATCGATCTGCATGTCGAAGTGCCGCGACTGCCGCCGCAAGCATTGCGCAGCGGCAAC
GTCGGCGAGGACAGCGCCAGCGTGCGTGCACGCGTGGTCGCAGCCCGTGAACGACAGCTTGCGCGCGCCACCGTGCCCAA
TGCGCAACTCGACCAGGCAGACACCGATCGCCACTGCCGCCTGCAGGGCGACGATCAGCTGCTGCTGGAGCGCGCGATCG
AGCATCTGCAGCTGTCCGCACGCTCGATGCACCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GGGATCGCCACGCGCCATCTGACCGAAGCGATCGGCTACCGCAAACTGGATCGCACGTTGAGCGCAGCGAGCGCGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.115

100

0.571
  comM Haemophilus influenzae Rd KW20

55.186

100

0.557
  comM Vibrio campbellii strain DS40M4

54.51

100

0.549
  comM Glaesserella parasuis strain SC1401

54.241

100

0.543
  comM Legionella pneumophila str. Paris

52.4

98.814

0.518
  comM Legionella pneumophila strain ERS1305867

52.4

98.814

0.518
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.669

100

0.458

Multiple sequence alignment