Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | CS885_RS05570 | Genome accession | NZ_LT838273 |
| Coordinates | 1128913..1130049 (+) | Length | 378 a.a. |
| NCBI ID | WP_089086477.1 | Uniprot ID | A0A238GTD4 |
| Organism | Helicobacter pylori isolate HE93/10_v1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1123913..1135049
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CS885_RS05535 | panD | 1124340..1124693 (+) | 354 | WP_000142286.1 | aspartate 1-decarboxylase | - |
| CS885_RS05540 | - | 1124696..1124998 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CS885_RS05545 | - | 1124998..1126002 (+) | 1005 | WP_089086474.1 | PDZ domain-containing protein | - |
| CS885_RS05550 | comB6 | 1126010..1127065 (+) | 1056 | WP_089086475.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| CS885_RS05555 | comB7 | 1127081..1127194 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| CS885_RS05560 | comB8 | 1127191..1127934 (+) | 744 | WP_000660557.1 | type IV secretion system protein | Machinery gene |
| CS885_RS05565 | comB9 | 1127934..1128920 (+) | 987 | WP_089086476.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| CS885_RS05570 | comB10 | 1128913..1130049 (+) | 1137 | WP_089086477.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| CS885_RS05575 | - | 1130119..1131531 (+) | 1413 | WP_089086478.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| CS885_RS05580 | gmd | 1131572..1132717 (+) | 1146 | WP_089086479.1 | GDP-mannose 4,6-dehydratase | - |
| CS885_RS05585 | - | 1132710..1133642 (+) | 933 | WP_001002481.1 | GDP-L-fucose synthase family protein | - |
| CS885_RS08400 | - | 1133670..1133879 (-) | 210 | Protein_1053 | anthranilate synthase component I | - |
| CS885_RS08620 | - | 1134030..1134323 (-) | 294 | WP_099167445.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42184.68 Da Isoelectric Point: 9.7473
>NTDB_id=1146406 CS885_RS05570 WP_089086477.1 1128913..1130049(+) (comB10) [Helicobacter pylori isolate HE93/10_v1]
MNKWLKGAIVFIGGFATITTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKINTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDTATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFIGGFATITTISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKINTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKE
KDTATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=1146406 CS885_RS05570 WP_089086477.1 1128913..1130049(+) (comB10) [Helicobacter pylori isolate HE93/10_v1]
GTGAATAAGTGGCTTAAAGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGATGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCTAAAGACGCCACCATTAAAGCCTTACAAGAACAACTCAAAGCC
GCTTTAAAAGCCTTAAATTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATGGATCCAAAAAT
AAACACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAAGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGAAGCAGGGTTTTCATTTCGCCCAATACTGATATATTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CAGAGTTTTTGAAGTGA
GTGAATAAGTGGCTTAAAGGGGCGATTGTTTTTATAGGGGGTTTTGCAACGATTACAACCATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGATGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCTAAAGACGCCACCATTAAAGCCTTACAAGAACAACTCAAAGCC
GCTTTAAAAGCCTTAAATTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTACTAGCCCTCCCATGGATCCAAAAAT
AAACACAACCCCCCCTAAAAAAGACTTTTCTTTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCCTTTTTGATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAAGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGAATCATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGATTAGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAATAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGT
GATTAGAGAGGGAAGCAGGGTTTTCATTTCGCCCAATACTGATATATTCTTCCCTATACCCAGAGAGAATGAAGTCATCG
CAGAGTTTTTGAAGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.561 |
100 |
0.966 |