Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   CS885_RS05560 Genome accession   NZ_LT838273
Coordinates   1127191..1127934 (+) Length   247 a.a.
NCBI ID   WP_000660557.1    Uniprot ID   -
Organism   Helicobacter pylori isolate HE93/10_v1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1122191..1132934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS885_RS05535 panD 1124340..1124693 (+) 354 WP_000142286.1 aspartate 1-decarboxylase -
  CS885_RS05540 - 1124696..1124998 (+) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  CS885_RS05545 - 1124998..1126002 (+) 1005 WP_089086474.1 PDZ domain-containing protein -
  CS885_RS05550 comB6 1126010..1127065 (+) 1056 WP_089086475.1 P-type conjugative transfer protein TrbL Machinery gene
  CS885_RS05555 comB7 1127081..1127194 (+) 114 WP_001217877.1 hypothetical protein Machinery gene
  CS885_RS05560 comB8 1127191..1127934 (+) 744 WP_000660557.1 type IV secretion system protein Machinery gene
  CS885_RS05565 comB9 1127934..1128920 (+) 987 WP_089086476.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  CS885_RS05570 comB10 1128913..1130049 (+) 1137 WP_089086477.1 DNA type IV secretion system protein ComB10 Machinery gene
  CS885_RS05575 - 1130119..1131531 (+) 1413 WP_089086478.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  CS885_RS05580 gmd 1131572..1132717 (+) 1146 WP_089086479.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28707.97 Da        Isoelectric Point: 8.9604

>NTDB_id=1146404 CS885_RS05560 WP_000660557.1 1127191..1127934(+) (comB8) [Helicobacter pylori isolate HE93/10_v1]
MKEKPFNSEQLIYLEELLSHQEKHLESKLSGFSVNDLDMQSVFRLERNRLKIAYRLLGLMSFIALVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKAQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APISRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=1146404 CS885_RS05560 WP_000660557.1 1127191..1127934(+) (comB8) [Helicobacter pylori isolate HE93/10_v1]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAGAG
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTTCGGCTAGAAAGGAACCGCTTGAAAATCGCTT
ACAGGCTTTTAGGTTTGATGAGCTTTATCGCGCTTGTCTTAGCGATCGTTTTAATCAGCATTCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGACGATAAATCCCGCT
ATGAACTGGTGCGCTTGCAAAGCAGCTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAGCCCAAAACAGCATCTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCAGCTAAACTTTTGAATGAGAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGATTAGTAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.547

100

0.955

Multiple sequence alignment