Detailed information NTG1146402

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: CS885_RS05550
• Genome accession: NZ_LT838273
• Coordinates: 1126010..1127065 (+)
• Length: 351 a.a.
• NCBI ID: WP_089086475.1
• Uniprot ID: -
• Organism: Helicobacter pylori isolate HE93/10_v1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1121010..1132065

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CS885_RS05520	-	1121432..1121845 (+)	414	WP_001023005.1	universal stress protein	-
CS885_RS05525	-	1121847..1122122 (+)	276	WP_000781792.1	ATP-dependent Clp protease adaptor ClpS	-
CS885_RS05530	-	1122122..1124350 (+)	2229	WP_089086473.1	AAA family ATPase	-
CS885_RS05535	panD	1124340..1124693 (+)	354	WP_000142286.1	aspartate 1-decarboxylase	-
CS885_RS05540	-	1124696..1124998 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
CS885_RS05545	-	1124998..1126002 (+)	1005	WP_089086474.1	PDZ domain-containing protein	-
CS885_RS05550	comB6	1126010..1127065 (+)	1056	WP_089086475.1	P-type conjugative transfer protein TrbL	Machinery gene
CS885_RS05555	comB7	1127081..1127194 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
CS885_RS05560	comB8	1127191..1127934 (+)	744	WP_000660557.1	type IV secretion system protein	Machinery gene
CS885_RS05565	comB9	1127934..1128920 (+)	987	WP_089086476.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CS885_RS05570	comB10	1128913..1130049 (+)	1137	WP_089086477.1	DNA type IV secretion system protein ComB10	Machinery gene
CS885_RS05575	-	1130119..1131531 (+)	1413	WP_089086478.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39677.63 Da
• Isoelectric Point: 8.6737

>NTDB_id=1146402 CS885_RS05550 WP_089086475.1 1126010..1127065(+) (comB6) [Helicobacter pylori isolate HE93/10_v1]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASVLLEALWFVGFFALFNY
ALKNPSCFYELFQNAIFVAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQVLFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSALQSLQYTTTSPALSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=1146402 CS885_RS05550 WP_089086475.1 1126010..1127065(+) (comB6) [Helicobacter pylori isolate HE93/10_v1]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTTTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCTAGCGTGCTTTTAGAAGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGTGCTTTTATGAATTGTTTCAAAACGCTATTTTTGTTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATTTTTAATCATGGTTTTTATGCCCTTAGCT
TCATCAGCGATTTGAGCCATAACGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGTGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGATTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTAG
TGGGTTTTTTGAACGTGTCGGTTACTAAGGCGTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTGCAATCTTTACAATATACCA
CAACCTCGCCCGCTCTTTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	92.593	100	0.926