Detailed information NTG1146405

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: CS885_RS05565
• Genome accession: NZ_LT838273
• Coordinates: 1127934..1128920 (+)
• Length: 328 a.a.
• NCBI ID: WP_089086476.1
• Uniprot ID: A0A238GT51
• Organism: Helicobacter pylori isolate HE93/10_v1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1122934..1133920

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CS885_RS05535	panD	1124340..1124693 (+)	354	WP_000142286.1	aspartate 1-decarboxylase	-
CS885_RS05540	-	1124696..1124998 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
CS885_RS05545	-	1124998..1126002 (+)	1005	WP_089086474.1	PDZ domain-containing protein	-
CS885_RS05550	comB6	1126010..1127065 (+)	1056	WP_089086475.1	P-type conjugative transfer protein TrbL	Machinery gene
CS885_RS05555	comB7	1127081..1127194 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
CS885_RS05560	comB8	1127191..1127934 (+)	744	WP_000660557.1	type IV secretion system protein	Machinery gene
CS885_RS05565	comB9	1127934..1128920 (+)	987	WP_089086476.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CS885_RS05570	comB10	1128913..1130049 (+)	1137	WP_089086477.1	DNA type IV secretion system protein ComB10	Machinery gene
CS885_RS05575	-	1130119..1131531 (+)	1413	WP_089086478.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CS885_RS05580	gmd	1131572..1132717 (+)	1146	WP_089086479.1	GDP-mannose 4,6-dehydratase	-
CS885_RS05585	-	1132710..1133642 (+)	933	WP_001002481.1	GDP-L-fucose synthase family protein	-
CS885_RS08400	-	1133670..1133879 (-)	210	Protein_1053	anthranilate synthase component I	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37858.64 Da
• Isoelectric Point: 9.5584

>NTDB_id=1146405 CS885_RS05565 WP_089086476.1 1127934..1128920(+) (comB9) [Helicobacter pylori isolate HE93/10_v1]
MRKVLYALIGFLLAFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNINYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMAENAPKDAQKNNKPLKEEKEETKTPEEEVIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCL
WACSKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIR
FVKRSKGE

Nucleotide

• Length: 987 bp

>NTDB_id=1146405 CS885_RS05565 WP_089086476.1 1127934..1128920(+) (comB9) [Helicobacter pylori isolate HE93/10_v1]
ATGCGTAAGGTTTTATACGCTCTCATTGGGTTTTTGTTGGCTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAATATTAATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
CAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTTGATTCCAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAACCCCAGAAGAAGAGGTGATAATTATTGGCGATAACACTA
ATGCGATGAAAATTATTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
TGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATCTTTAACGACAAACAATTCACTTATTTCAAATT
TGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAATCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGT
TTTGTCAAAAGGAGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-319)

3D structure

• AlphaFold DB: A0A238GT51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	90.854	100	0.909