Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DG177_RS07610 Genome accession   NZ_LT703001
Coordinates   1546893..1547420 (-) Length   175 a.a.
NCBI ID   WP_108810934.1    Uniprot ID   -
Organism   Sphingorhabdus sp. Alg231-15 isolate Sphingorhabdus sp. Alg231_15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1541893..1552420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG177_RS07585 ccoP 1542399..1543340 (-) 942 WP_108810930.1 cytochrome-c oxidase, cbb3-type subunit III -
  DG177_RS07590 - 1543333..1543494 (-) 162 WP_108810931.1 cbb3-type cytochrome c oxidase subunit 3 -
  DG177_RS07595 ccoO 1543491..1544225 (-) 735 WP_108810932.1 cytochrome-c oxidase, cbb3-type subunit II -
  DG177_RS07600 ccoN 1544239..1545909 (-) 1671 WP_108810933.1 cytochrome-c oxidase, cbb3-type subunit I -
  DG177_RS07605 - 1546068..1546775 (-) 708 WP_337658626.1 Crp/Fnr family transcriptional regulator -
  DG177_RS07610 ssb 1546893..1547420 (-) 528 WP_108810934.1 single-stranded DNA-binding protein Machinery gene
  DG177_RS07615 - 1547471..1549330 (-) 1860 WP_108810935.1 ferrous iron transporter B -
  DG177_RS07620 - 1549334..1549600 (-) 267 WP_337658627.1 FeoA family protein -
  DG177_RS07625 - 1549727..1550404 (-) 678 WP_108810936.1 COQ9 family protein -
  DG177_RS07630 - 1550545..1551642 (+) 1098 WP_108810937.1 alkene reductase -
  DG177_RS07635 - 1551661..1552116 (-) 456 WP_108810938.1 DUF1465 family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18097.64 Da        Isoelectric Point: 4.8249

>NTDB_id=1146109 DG177_RS07610 WP_108810934.1 1546893..1547420(-) (ssb) [Sphingorhabdus sp. Alg231-15 isolate Sphingorhabdus sp. Alg231_15]
MAGGINKVIIVGNLGADPEVRTFNNGGKVCNLRIATSESWKDRNTGERKEKTEWHSVAIFSEGLAGVAEKYLRKGSKVYI
EGKLQTRKWQDQSGNDRYSTEIVLQGFDGKLEMLDSRQGGGMGGQGGGNDGWSGGGSGGGSGGGSNDGWGNTGGGSSGGQ
GGGAFDSDLDDDVPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1146109 DG177_RS07610 WP_108810934.1 1546893..1547420(-) (ssb) [Sphingorhabdus sp. Alg231-15 isolate Sphingorhabdus sp. Alg231_15]
ATGGCTGGCGGCATCAATAAAGTAATTATCGTAGGAAACCTGGGTGCCGACCCTGAAGTGCGTACGTTTAACAACGGCGG
TAAAGTCTGCAATCTGCGCATCGCGACATCCGAAAGCTGGAAAGATCGCAATACTGGTGAGCGCAAAGAAAAGACCGAGT
GGCACAGCGTCGCGATCTTCTCCGAAGGGCTGGCCGGCGTTGCGGAAAAATATCTGCGTAAGGGCAGCAAAGTCTATATC
GAAGGCAAGTTACAAACCCGCAAATGGCAGGATCAGTCCGGCAATGACCGCTATTCGACTGAGATTGTCTTGCAGGGTTT
TGATGGCAAGCTGGAAATGCTCGATTCCCGCCAAGGCGGCGGCATGGGCGGCCAAGGCGGCGGCAATGATGGCTGGAGCG
GCGGCGGTTCAGGTGGCGGCTCGGGCGGCGGTTCCAATGACGGCTGGGGCAACACTGGCGGTGGGTCTTCCGGCGGTCAA
GGTGGTGGCGCGTTTGACAGCGACCTGGATGACGACGTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.267

100

0.537
  ssb Vibrio cholerae strain A1552

52.874

99.429

0.526
  ssb Neisseria meningitidis MC58

37.079

100

0.377
  ssb Neisseria gonorrhoeae MS11

37.079

100

0.377

Multiple sequence alignment