Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BQ8290_RS02120 Genome accession   NZ_LT702999
Coordinates   453168..453704 (-) Length   178 a.a.
NCBI ID   WP_108791763.1    Uniprot ID   -
Organism   Erythrobacter sp. Alg231-14 isolate Erythrobacter sp. Alg231_14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 448168..458704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BQ8290_RS02090 hslU 448533..449849 (-) 1317 WP_108787206.1 ATP-dependent protease ATPase subunit HslU -
  BQ8290_RS02095 hslV 449867..450439 (-) 573 WP_108787208.1 ATP-dependent protease subunit HslV -
  BQ8290_RS02100 bamE 450508..450987 (-) 480 WP_337660916.1 outer membrane protein assembly factor BamE -
  BQ8290_RS02105 - 451211..451738 (+) 528 WP_108787212.1 ubiquinol-cytochrome C chaperone family protein -
  BQ8290_RS02110 - 451732..452292 (+) 561 WP_108787214.1 YceD family protein -
  BQ8290_RS02115 - 452365..453060 (+) 696 WP_108787216.1 hypothetical protein -
  BQ8290_RS02120 ssb 453168..453704 (-) 537 WP_108791763.1 single-stranded DNA-binding protein Machinery gene
  BQ8290_RS02125 - 453833..454522 (-) 690 WP_108787218.1 COQ9 family protein -
  BQ8290_RS02130 - 454524..455168 (-) 645 WP_337660917.1 ankyrin repeat domain-containing protein -
  BQ8290_RS02135 - 455255..455866 (+) 612 WP_108787222.1 SCO family protein -
  BQ8290_RS02140 - 455868..456365 (+) 498 WP_108787224.1 YcgN family cysteine cluster protein -
  BQ8290_RS02145 - 456362..457096 (+) 735 WP_108787226.1 SprT family zinc-dependent metalloprotease -
  BQ8290_RS02150 - 457214..457762 (+) 549 WP_337660918.1 DUF4402 domain-containing protein -
  BQ8290_RS02155 - 457832..458359 (+) 528 WP_337660919.1 hypothetical protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18064.61 Da        Isoelectric Point: 5.7763

>NTDB_id=1146099 BQ8290_RS02120 WP_108791763.1 453168..453704(-) (ssb) [Erythrobacter sp. Alg231-14 isolate Erythrobacter sp. Alg231_14]
MAGSLNKVMLIGNLGADPEIRSFQNGGRVANLRIATSENWKDKNTGERREKTEWHTVAIFSDGLVNVVERYLKKGSKVFV
EGKLQTRKWQDQSGNDRYSTEVVIQGLGGTLTMLDGRGEGGGGGGSGGYGGGNQGGGQGGGGGGWNQGGGGSGSGNGGGS
GGGFGGGGHDDLDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1146099 BQ8290_RS02120 WP_108791763.1 453168..453704(-) (ssb) [Erythrobacter sp. Alg231-14 isolate Erythrobacter sp. Alg231_14]
ATGGCGGGCTCGCTTAATAAGGTCATGTTGATCGGCAATCTTGGGGCGGATCCTGAAATCCGCTCGTTCCAAAATGGTGG
CCGCGTTGCCAATCTGCGCATCGCGACCAGCGAAAATTGGAAAGATAAGAACACCGGTGAACGCCGCGAGAAAACCGAAT
GGCACACGGTTGCGATTTTCTCTGATGGGCTCGTCAATGTTGTCGAACGCTACCTAAAAAAGGGCAGCAAAGTCTTTGTC
GAAGGCAAACTGCAGACCCGCAAATGGCAAGATCAAAGCGGCAATGATCGCTACTCCACCGAAGTGGTAATCCAAGGTCT
CGGTGGGACGCTTACTATGCTCGACGGTCGCGGCGAAGGCGGCGGTGGCGGCGGCTCCGGTGGTTATGGCGGCGGCAATC
AAGGCGGCGGCCAAGGCGGGGGTGGCGGCGGCTGGAACCAAGGCGGCGGCGGCTCAGGCAGCGGTAATGGTGGCGGTTCG
GGCGGCGGATTTGGTGGCGGCGGTCACGATGATTTGGATGACGACATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.149

97.753

0.5
  ssb Glaesserella parasuis strain SC1401

47.312

100

0.494
  ssb Neisseria gonorrhoeae MS11

37.43

100

0.376
  ssb Neisseria meningitidis MC58

36.872

100

0.371
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.912

100

0.365

Multiple sequence alignment