Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   BUC38_RS08310 Genome accession   NZ_LT671674
Coordinates   1703787..1706024 (-) Length   745 a.a.
NCBI ID   WP_044690332.1    Uniprot ID   -
Organism   Streptococcus suis strain LS9N     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1698787..1711024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS08310 comEC/celB 1703787..1706024 (-) 2238 WP_044690332.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BUC38_RS08315 comEA/celA/cilE 1706008..1706670 (-) 663 WP_052503070.1 helix-hairpin-helix domain-containing protein Machinery gene
  BUC38_RS08320 - 1706738..1707484 (-) 747 WP_014735985.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  BUC38_RS08325 - 1707632..1709077 (+) 1446 WP_044690333.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  BUC38_RS08335 - 1709543..1710328 (+) 786 WP_014636900.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 83833.63 Da        Isoelectric Point: 7.1959

>NTDB_id=1146005 BUC38_RS08310 WP_044690332.1 1703787..1706024(-) (comEC/celB) [Streptococcus suis strain LS9N]
MSRLSKLPCQPIHLAILAVVAYFAVHSFSLLTMGLLSLVLAVFGFRQGKAVFLKTLLLLALCGLFFGCQKVQWERADQSA
TEQVTTVQVIPDTIDINGDNLSFRGRADGQTYQVFYKLASQEEQAYFQKLTGLVQLEVEAEVSQPAGQRNFKGFDYQAYL
KTQGIYRTVKIMAIKKIVPVQSWNVFDWLSSWRRQALVYVKTNFPAPMSHYMTGLLFGELDSDFDQMSDLYSSLGIIHLF
ALSGMQVGFFIDKFRWILLRLGLTKETVDKLQIPFSLVYAGLTGFSVSVVRSLVQKILGNMGLRKLDNFAVTVFVCLLIL
PRFLLTAGGVLTFTYAFLLTVFDFEDLGQVKKAAVESFSISLGILPVLMTYFYAFQPLSILLTFAFSFIFDVLLLPGLSV
IFLLSPVVKITWVNGFFVFMEKIIVWVADLGFRPWILGKPSGLVLLLLLVSLFLLYDFHRKKKWLLGLSLVLALLFFITK
HPLENEVTVVDIGQGDSIFLRDMRGRTVLIDVGGRVDFAAKEAWQERSRQANAERTLIPYLHSRGVDRIDSLVLTHTDTD
HVGDVLEVAKQVQIGQIYVSPGSLTVPDFVATLKEINVPVHVVAVGDRLPIFGSYLEVLYPDGTGDGGNNDSVVLYGRLL
ETNFLFTGDLEQGELDLIETYPNLPVDVLKAGHHGSKGSSYPEFLDHIGAKIALVSAGENNRYKHPHQETLERFDSRNIQ
VYRTDQQGAIRFRGWKEWRIETVRE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=1146005 BUC38_RS08310 WP_044690332.1 1703787..1706024(-) (comEC/celB) [Streptococcus suis strain LS9N]
ATGTCACGGTTGAGTAAGCTCCCCTGCCAGCCCATCCACCTAGCCATCTTAGCGGTGGTGGCCTACTTTGCAGTCCACTC
TTTTTCCCTTTTGACAATGGGCCTGCTCAGTTTGGTGTTAGCTGTCTTTGGTTTTCGGCAAGGTAAGGCAGTTTTCCTCA
AAACGCTGCTGCTTCTAGCCCTGTGCGGTCTGTTTTTCGGATGTCAAAAGGTCCAATGGGAGCGGGCAGATCAGTCAGCC
ACAGAGCAAGTCACCACTGTGCAGGTCATTCCAGATACTATTGATATTAATGGCGACAATCTATCTTTTCGTGGTCGGGC
TGACGGACAAACCTATCAGGTTTTCTACAAATTAGCTAGTCAGGAGGAACAGGCCTATTTTCAAAAGCTGACAGGTCTGG
TTCAGCTAGAAGTGGAAGCAGAGGTCAGCCAGCCAGCTGGTCAGCGGAATTTCAAGGGTTTTGACTATCAGGCCTACCTG
AAAACACAGGGTATTTATCGGACGGTCAAGATTATGGCAATCAAGAAGATTGTCCCAGTCCAGTCTTGGAATGTTTTTGA
CTGGCTATCAAGCTGGCGGAGGCAGGCCTTGGTCTATGTCAAAACCAATTTTCCGGCTCCCATGAGTCACTACATGACAG
GGCTTTTGTTTGGGGAGCTGGATAGTGATTTCGACCAGATGAGTGACCTCTATTCTAGTCTAGGAATCATTCATCTCTTT
GCCCTGTCTGGTATGCAGGTGGGCTTTTTCATCGACAAGTTTCGTTGGATTTTGTTGCGTCTGGGTTTGACCAAGGAAAC
GGTGGATAAGTTGCAGATTCCCTTTTCCCTTGTCTATGCTGGTTTGACAGGTTTTTCGGTGTCAGTAGTGCGGTCCCTGG
TCCAGAAAATTCTGGGCAATATGGGCTTGCGGAAGTTGGATAACTTTGCGGTGACAGTCTTTGTCTGTCTCCTGATTCTG
CCCCGATTTCTCTTGACAGCAGGAGGAGTGCTGACTTTTACCTATGCTTTCTTGCTGACGGTCTTTGATTTTGAGGACTT
GGGGCAGGTCAAAAAGGCTGCGGTGGAGAGCTTCAGTATTTCCCTGGGAATTTTGCCGGTGCTGATGACCTATTTCTATG
CCTTCCAGCCCCTGTCTATTCTCCTGACCTTTGCCTTTTCCTTTATCTTTGATGTCCTGCTCTTGCCAGGTTTGTCGGTC
ATTTTTCTCCTGTCGCCAGTTGTCAAGATAACTTGGGTCAACGGATTTTTTGTCTTTATGGAGAAAATCATTGTCTGGGT
GGCGGATTTGGGCTTTCGGCCTTGGATACTGGGCAAGCCGTCTGGGCTGGTTCTCTTGCTTTTGCTGGTCAGCCTCTTCT
TACTCTATGATTTTCACAGGAAGAAAAAATGGCTCTTAGGACTGAGCCTGGTCCTCGCTCTGCTATTTTTCATAACCAAA
CACCCGCTGGAAAACGAGGTGACGGTGGTGGATATCGGGCAGGGGGACAGCATCTTTTTGCGGGATATGCGGGGGCGGAC
GGTCCTGATTGATGTGGGCGGACGGGTCGATTTTGCGGCTAAGGAAGCGTGGCAGGAGCGGTCTCGGCAGGCAAATGCAG
AGCGGACCTTGATTCCCTATCTGCATAGTCGGGGTGTGGACAGGATTGATAGTTTGGTCCTGACCCATACCGATACGGAC
CATGTGGGCGATGTGCTGGAAGTAGCTAAGCAGGTTCAAATTGGTCAAATTTACGTGTCGCCTGGAAGCCTGACGGTGCC
TGACTTTGTAGCCACCTTGAAAGAAATCAATGTCCCTGTTCATGTAGTGGCGGTGGGCGACCGCTTGCCGATTTTTGGCT
CCTATCTGGAAGTCCTCTATCCAGACGGGACAGGCGACGGTGGCAATAATGACTCTGTTGTTCTTTACGGTCGTTTGCTG
GAAACCAATTTTCTCTTCACAGGGGACTTGGAGCAAGGGGAGTTGGACTTGATAGAAACCTATCCCAACCTGCCTGTTGA
TGTACTCAAAGCTGGTCACCATGGCTCCAAAGGCTCTTCTTATCCTGAATTTTTAGACCATATCGGAGCCAAGATTGCTC
TGGTATCAGCAGGAGAAAATAACCGCTACAAGCATCCCCATCAAGAAACCTTGGAACGATTTGATAGTCGCAATATCCAA
GTCTATCGCACCGACCAGCAAGGAGCTATCCGCTTTCGAGGTTGGAAGGAGTGGCGAATTGAAACGGTGAGGGAGTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-176)

Metallo-beta-lactamase superfamily (Lactamase_B)

(493-698)

Competence protein (Competence)

(215-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

54.459

99.329

0.541
  comEC/celB Streptococcus mitis NCTC 12261

53.197

98.658

0.525
  comEC/celB Streptococcus pneumoniae TIGR4

52.31

98.792

0.517
  comEC/celB Streptococcus pneumoniae Rx1

52.038

98.792

0.514
  comEC/celB Streptococcus pneumoniae D39

52.038

98.792

0.514
  comEC/celB Streptococcus pneumoniae R6

52.038

98.792

0.514
  comEC Lactococcus lactis subsp. cremoris KW2

48.128

100

0.483

Multiple sequence alignment