Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   BUC38_RS02880 Genome accession   NZ_LT671674
Coordinates   564313..564957 (-) Length   214 a.a.
NCBI ID   WP_044690656.1    Uniprot ID   A0A0Z8IIT8
Organism   Streptococcus suis strain LS9N     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 559313..569957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUC38_RS02860 - 559692..560213 (+) 522 WP_044690653.1 VanZ family protein -
  BUC38_RS02865 trpB 560745..561920 (+) 1176 WP_044690724.1 tryptophan synthase subunit beta -
  BUC38_RS02870 nadE 561962..562786 (-) 825 WP_024382384.1 ammonia-dependent NAD(+) synthetase -
  BUC38_RS02875 - 562799..564259 (-) 1461 WP_044690655.1 nicotinate phosphoribosyltransferase -
  BUC38_RS02880 cclA/cilC 564313..564957 (-) 645 WP_044690656.1 A24 family peptidase Machinery gene
  BUC38_RS02885 - 565011..565829 (-) 819 WP_044690657.1 cation diffusion facilitator family transporter -
  BUC38_RS02890 - 565951..566469 (+) 519 WP_044690658.1 TetR/AcrR family transcriptional regulator -
  BUC38_RS02895 - 566479..567033 (+) 555 WP_044690660.1 class I SAM-dependent methyltransferase -
  BUC38_RS02900 - 567054..567938 (-) 885 WP_153597580.1 LPXTG cell wall anchor domain-containing protein -
  BUC38_RS02905 - 568236..569015 (-) 780 WP_044690663.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24354.41 Da        Isoelectric Point: 8.7028

>NTDB_id=1145988 BUC38_RS02880 WP_044690656.1 564313..564957(-) (cclA/cilC) [Streptococcus suis strain LS9N]
MKTIILFFLGASIGSFLGLVIDRFPEQSIIAPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LLVLLCHFHILSIAETVLIFAGLVLTIYDIKHQEYPFAVWLLFTFVALILSQLNWLFCGFLVLAYLTEKWQLNIGSGDFL
YLASLSLLFGFTEILWIIQLSSILGLAIFFIFKPKSLPYVPFLFLASLIINITL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1145988 BUC38_RS02880 WP_044690656.1 564313..564957(-) (cclA/cilC) [Streptococcus suis strain LS9N]
ATGAAGACAATTATCCTATTTTTCCTCGGAGCTTCTATCGGCTCCTTCCTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCGCCCCATCTAGTCACTGCAATGCCTGCAAACGACGGCTAAAAGCTTGGGATCTCATACCAATCCTGTCCC
AGCTTTCCACAAAATCTAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGACTGGAGTTCTTAGCTGGT
CTATTGGTCCTGCTCTGCCATTTTCACATCCTATCCATAGCTGAAACCGTTCTTATTTTTGCAGGGCTGGTCTTGACCAT
TTACGACATCAAGCATCAGGAATATCCCTTCGCTGTCTGGCTACTCTTTACCTTTGTTGCCCTCATTCTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTGGTCCTAGCCTATCTGACTGAAAAATGGCAACTCAATATCGGTTCTGGCGATTTTCTC
TATCTGGCCAGTCTGTCACTTTTGTTTGGCTTTACAGAAATTCTCTGGATTATTCAGCTTAGTTCCATCCTAGGTCTGGC
TATCTTTTTCATCTTTAAACCAAAATCCCTACCCTATGTACCTTTTCTTTTTTTGGCCAGCCTGATTATCAATATCACTC
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z8IIT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

49.289

98.598

0.486
  cclA/cilC Streptococcus pneumoniae Rx1

48.78

95.794

0.467
  cclA/cilC Streptococcus pneumoniae D39

48.78

95.794

0.467
  cclA/cilC Streptococcus pneumoniae R6

48.78

95.794

0.467
  cclA/cilC Streptococcus pneumoniae TIGR4

48.78

95.794

0.467
  cclA/cilC Streptococcus mitis NCTC 12261

46.919

98.598

0.463

Multiple sequence alignment