Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CINFORN2912_RS01850 Genome accession   NZ_LT667500
Coordinates   409917..410459 (-) Length   180 a.a.
NCBI ID   WP_075434157.1    Uniprot ID   -
Organism   Buchnera aphidicola strain BCifornacula voucher 2912     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 404917..415459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CINFORN2912_RS01820 rpe 405288..405950 (-) 663 WP_075434150.1 ribulose-phosphate 3-epimerase -
  CINFORN2912_RS01825 aroB 406076..407188 (-) 1113 WP_075434151.1 3-dehydroquinate synthase -
  CINFORN2912_RS01830 aroK 407236..407772 (-) 537 WP_075434252.1 shikimate kinase AroK -
  CINFORN2912_RS01840 - 408361..408942 (-) 582 WP_075434153.1 NfuA family Fe-S biogenesis protein -
  CINFORN2912_RS01845 - 409055..409852 (+) 798 WP_075434155.1 alpha/beta fold hydrolase -
  CINFORN2912_RS01850 ssb 409917..410459 (-) 543 WP_075434157.1 single-stranded DNA-binding protein Machinery gene
  CINFORN2912_RS01855 dusA 410682..411725 (+) 1044 WP_082253692.1 tRNA dihydrouridine(20/20a) synthase DusA -
  CINFORN2912_RS01860 dnaB 412043..413413 (+) 1371 WP_154101270.1 replicative DNA helicase -
  CINFORN2912_RS01865 ruvX 413914..414333 (+) 420 WP_075434158.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20009.30 Da        Isoelectric Point: 5.8106

>NTDB_id=1145922 CINFORN2912_RS01850 WP_075434157.1 409917..410459(-) (ssb) [Buchnera aphidicola strain BCifornacula voucher 2912]
MASRGVNKVILIGYLGQDPDVRYMPNGGAVVNITIATSDVWRDKNTGETKEKTEWHRVVLFGKIAEISGQYLKKGSQVYI
EGSLQTRKWKDQNGLDRYTTEVVVSVTGSMQMLGSRNTNSNMNPESSGNKKTPIALDKNLTTSNLSEKNVNNDLSSEYND
KSHLVDTASKIDFDDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1145922 CINFORN2912_RS01850 WP_075434157.1 409917..410459(-) (ssb) [Buchnera aphidicola strain BCifornacula voucher 2912]
ATGGCAAGTAGAGGTGTAAATAAAGTTATTTTGATCGGTTATTTAGGTCAAGATCCTGATGTTCGTTATATGCCTAATGG
CGGGGCGGTAGTGAATATTACTATTGCTACCTCTGATGTTTGGCGAGACAAAAATACAGGTGAAACTAAAGAAAAAACTG
AATGGCATCGTGTAGTTTTGTTTGGTAAAATAGCAGAAATTTCTGGTCAATATTTGAAAAAAGGATCTCAAGTATATATT
GAGGGATCTCTACAAACGCGTAAATGGAAAGATCAAAATGGACTGGATCGTTATACAACTGAAGTCGTAGTTAGTGTTAC
TGGATCTATGCAAATGTTAGGTTCTCGCAACACAAACAGCAATATGAATCCAGAATCTTCTGGTAATAAAAAAACGCCTA
TTGCCCTAGACAAAAATTTAACTACTTCTAACCTTTCTGAAAAAAATGTTAATAATGACCTTTCTTCAGAATATAATGAT
AAATCCCATTTAGTGGATACAGCATCAAAGATTGATTTTGATGATGACGATATTCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.354

100

0.567
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.467
  ssb Neisseria meningitidis MC58

42.045

97.778

0.411
  ssb Neisseria gonorrhoeae MS11

42.045

97.778

0.411

Multiple sequence alignment