Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BUCIPSTX3056_RS01845 Genome accession   NZ_LT635893
Coordinates   409670..410200 (-) Length   176 a.a.
NCBI ID   WP_075474936.1    Uniprot ID   A0A451DHV5
Organism   Buchnera aphidicola (Cinara pseudotaxifoliae) strain BCipseudotaxifoliae voucher 3056     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 404670..415200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUCIPSTX3056_RS01815 (CINPSTX3056_RS01810) rpe 405258..405926 (-) 669 WP_075474927.1 ribulose-phosphate 3-epimerase -
  BUCIPSTX3056_RS01820 (CINPSTX3056_RS01815) aroB 406051..407148 (-) 1098 WP_154021615.1 3-dehydroquinate synthase -
  BUCIPSTX3056_RS01825 (CINPSTX3056_RS01820) aroK 407190..407732 (-) 543 WP_075474932.1 shikimate kinase AroK -
  BUCIPSTX3056_RS01835 (CINPSTX3056_RS01830) - 408099..408680 (-) 582 WP_075474934.1 NfuA family Fe-S biogenesis protein -
  BUCIPSTX3056_RS01840 (CINPSTX3056_RS01835) - 408822..409610 (+) 789 WP_082253736.1 alpha/beta fold hydrolase -
  BUCIPSTX3056_RS01845 (CINPSTX3056_RS01840) ssb 409670..410200 (-) 531 WP_075474936.1 single-stranded DNA-binding protein Machinery gene
  BUCIPSTX3056_RS01850 (CINPSTX3056_RS01845) dusA 410475..411473 (+) 999 WP_075474938.1 tRNA dihydrouridine(20/20a) synthase DusA -
  BUCIPSTX3056_RS01855 (CINPSTX3056_RS01850) dnaB 411717..413090 (+) 1374 WP_075474940.1 replicative DNA helicase -
  BUCIPSTX3056_RS01860 (CINPSTX3056_RS01855) ruvX 413481..413876 (+) 396 WP_075474942.1 Holliday junction resolvase RuvX -
  BUCIPSTX3056_RS01865 (CINPSTX3056_RS01860) hemW 413968..415119 (+) 1152 WP_075474945.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19613.96 Da        Isoelectric Point: 6.2445

>NTDB_id=1145917 BUCIPSTX3056_RS01845 WP_075474936.1 409670..410200(-) (ssb) [Buchnera aphidicola (Cinara pseudotaxifoliae) strain BCipseudotaxifoliae voucher 3056]
MASRGVNKVILIGYLGQHPDVRYMPNGGTVVNITIATSDIWKDKNTGETKEKTEWHRVVLFGKIAEIAGQYLKKGSQVYI
EGSLQTRKWQDQNGLDRYTTEIIVSVTGAMQMLGSRNINNSSSPVNTIQDVSRENSLSVSNNIDKISGDISSEYKNKSHL
VDTTSKIDFDDEDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1145917 BUCIPSTX3056_RS01845 WP_075474936.1 409670..410200(-) (ssb) [Buchnera aphidicola (Cinara pseudotaxifoliae) strain BCipseudotaxifoliae voucher 3056]
ATGGCGAGTAGAGGCGTAAATAAAGTTATTTTAATTGGTTATTTAGGACAACATCCAGATGTACGGTATATGCCTAACGG
GGGTACTGTAGTTAATATTACTATTGCTACTTCGGATATATGGAAAGACAAAAATACCGGTGAAACAAAAGAAAAAACTG
AATGGCACAGAGTTGTTTTATTTGGTAAAATTGCTGAAATTGCTGGTCAATATTTAAAAAAAGGATCACAAGTTTACATT
GAAGGATCGTTACAAACCCGTAAATGGCAAGATCAAAACGGATTAGATCGCTACACTACAGAAATAATAGTGAGTGTTAC
TGGTGCTATGCAAATGTTAGGTTCACGAAACATAAATAATTCTTCATCACCCGTTAACACGATACAAGATGTATCGCGAG
AAAATAGTTTATCTGTATCAAATAATATAGATAAAATTTCCGGAGACATTTCTTCTGAATATAAAAATAAATCGCATTTA
GTAGATACAACTTCTAAAATTGATTTTGATGACGAAGACATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A451DHV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.18

100

0.568
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.477
  ssb Neisseria gonorrhoeae MS11

40.909

100

0.409
  ssb Neisseria meningitidis MC58

40.909

100

0.409

Multiple sequence alignment