Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   C7S03_RS11725 Genome accession   NZ_LT592163
Coordinates   1993216..1994403 (+) Length   395 a.a.
NCBI ID   WP_003700604.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_W     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1988216..1999403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S03_RS11710 (WHOW_02188) - 1989136..1989735 (+) 600 WP_003690128.1 DUF4390 domain-containing protein -
  C7S03_RS11715 (WHOW_02189) - 1989735..1991855 (+) 2121 WP_003694352.1 HAMP domain-containing histidine kinase -
  C7S03_RS11720 (WHOW_02190) - 1991848..1993125 (+) 1278 WP_003690124.1 sigma-54-dependent transcriptional regulator -
  C7S03_RS11725 (WHOW_02191) dprA 1993216..1994403 (+) 1188 WP_003700604.1 DNA-processing protein DprA Machinery gene
  C7S03_RS11730 (WHOW_02192) - 1994429..1994890 (+) 462 WP_003690295.1 DUF494 domain-containing protein -
  C7S03_RS11735 (WHOW_02193) topA 1994968..1997274 (+) 2307 WP_014580418.1 type I DNA topoisomerase -
  C7S03_RS11740 (WHOW_02194) - 1997361..1998157 (+) 797 Protein_2026 IS1595 family transposase -
  C7S03_RS11745 (WHOW_02196) - 1998259..1999116 (+) 858 WP_144998632.1 opacity family porin -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41879.00 Da        Isoelectric Point: 6.3096

>NTDB_id=1144612 C7S03_RS11725 WP_003700604.1 1993216..1994403(+) (dprA) [Neisseria gonorrhoeae strain WHO_W]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLIAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTVAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRAVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=1144612 C7S03_RS11725 WP_003700604.1 1993216..1994403(+) (dprA) [Neisseria gonorrhoeae strain WHO_W]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGATCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCGTCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTCATGGCGGTGCCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGAGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCGTCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCGCCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae strain FA1090

99.494

100

0.995

  dprA Neisseria gonorrhoeae MS11

99.241

100

0.992

  dprA Neisseria meningitidis strain C311

89.673

100

0.901

  dprA Neisseria meningitidis MC58

89.673

100

0.901

  dprA Vibrio cholerae strain A1552

37.531

100

0.377


Multiple sequence alignment