Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   C7S07_RS11490 Genome accession   NZ_LT591898
Coordinates   1938079..1939266 (+) Length   395 a.a.
NCBI ID   WP_047919128.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO G     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1933079..1944266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S07_RS11475 (WHOG_02126) - 1933999..1934598 (+) 600 WP_003690290.1 DUF4390 domain-containing protein -
  C7S07_RS11480 (WHOG_02127) - 1934598..1936718 (+) 2121 WP_003690126.1 HAMP domain-containing histidine kinase -
  C7S07_RS11485 (WHOG_02128) - 1936711..1937988 (+) 1278 WP_003690124.1 sigma-54-dependent transcriptional regulator -
  C7S07_RS11490 (WHOG_02129) dprA 1938079..1939266 (+) 1188 WP_047919128.1 DNA-processing protein DprA Machinery gene
  C7S07_RS11495 (WHOG_02130) - 1939292..1939753 (+) 462 WP_003690120.1 DUF494 domain-containing protein -
  C7S07_RS11500 (WHOG_02131) topA 1939831..1942137 (+) 2307 WP_106346880.1 type I DNA topoisomerase -
  C7S07_RS11505 (WHOG_02132) - 1942224..1943020 (+) 797 Protein_1955 IS1595 family transposase -
  C7S07_RS11510 (WHOG_02133) - 1943122..1943949 (+) 828 WP_106346881.1 opacity family porin -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41861.93 Da        Isoelectric Point: 6.2394

>NTDB_id=1144042 C7S07_RS11490 WP_047919128.1 1938079..1939266(+) (dprA) [Neisseria gonorrhoeae strain WHO G]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWHNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRAVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=1144042 C7S07_RS11490 WP_047919128.1 1938079..1939266(+) (dprA) [Neisseria gonorrhoeae strain WHO G]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCACAATGCAGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGAGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCGTCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCGCCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

99.494

100

0.995

  dprA Neisseria gonorrhoeae strain FA1090

99.241

100

0.992

  dprA Neisseria meningitidis strain C311

89.924

100

0.904

  dprA Neisseria meningitidis MC58

89.924

100

0.904

  dprA Vibrio cholerae strain A1552

37.28

100

0.375


Multiple sequence alignment