Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   A8Q77_RS08285 Genome accession   NZ_LT571436
Coordinates   1785781..1786086 (-) Length   101 a.a.
NCBI ID   WP_064130790.1    Uniprot ID   A0A181CIZ3
Organism   Neisseria weaveri strain NCTC13585     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1777710..1786086 1785781..1786086 within 0


Gene organization within MGE regions


Location: 1777710..1786086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8Q77_RS08240 (SAMEA3174300_01652) - 1777710..1778582 (-) 873 WP_004285223.1 Rossmann-like and DUF2520 domain-containing protein -
  A8Q77_RS08245 (SAMEA3174300_01653) minC 1778678..1779397 (+) 720 WP_064130858.1 septum site-determining protein MinC -
  A8Q77_RS08250 (SAMEA3174300_01654) minD 1779440..1780252 (+) 813 WP_004285221.1 septum site-determining protein MinD -
  A8Q77_RS08255 (SAMEA3174300_01655) minE 1780256..1780519 (+) 264 WP_004285220.1 cell division topological specificity factor MinE -
  A8Q77_RS08260 (SAMEA3174300_01656) - 1780523..1781443 (+) 921 WP_004285396.1 hydrogen peroxide-inducible genes activator -
  A8Q77_RS08265 (SAMEA3174300_01657) - 1781621..1782067 (-) 447 WP_004285397.1 CopD family copper resistance protein -
  A8Q77_RS08270 (SAMEA3174300_01658) - 1782199..1782402 (+) 204 WP_004285217.1 glycine zipper 2TM domain-containing protein -
  A8Q77_RS10820 - 1782599..1782988 (-) 390 WP_231987965.1 OmpA family protein -
  A8Q77_RS10825 - 1782983..1783438 (-) 456 Protein_1628 outer membrane protein assembly factor BamE -
  A8Q77_RS08280 (SAMEA3174300_01660) pilE 1783815..1784312 (-) 498 WP_064130860.1 pilin Machinery gene
  A8Q77_RS08285 (SAMEA3174300_01661) comE 1785781..1786086 (-) 306 WP_064130790.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 10473.38 Da        Isoelectric Point: 10.5494

>NTDB_id=1143809 A8Q77_RS08285 WP_064130790.1 1785781..1786086(-) (comE) [Neisseria weaveri strain NCTC13585]
MKRYLLGLAGVLLSALSLAAVNINTATAEELKALPGIGPAKAEAIVAYRSANGPFKAVEDLKKVKGIGEGVYGRLKDEAT
VAGVKKKEAKPLAKKDGSKKP

Nucleotide


Download         Length: 306 bp        

>NTDB_id=1143809 A8Q77_RS08285 WP_064130790.1 1785781..1786086(-) (comE) [Neisseria weaveri strain NCTC13585]
ATGAAACGATATCTGTTGGGTTTGGCCGGAGTGCTGCTGTCGGCGCTGTCCTTGGCGGCGGTGAACATCAACACCGCAAC
GGCGGAGGAATTGAAGGCGCTGCCGGGTATCGGTCCGGCGAAGGCGGAGGCGATTGTGGCCTACCGCAGTGCGAACGGTC
CGTTCAAAGCGGTGGAGGACTTGAAGAAGGTGAAGGGGATAGGCGAAGGCGTGTACGGCCGTCTGAAGGATGAGGCGACG
GTGGCGGGGGTGAAGAAGAAGGAGGCGAAGCCGCTGGCGAAGAAAGACGGAAGTAAAAAACCTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A181CIZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comEA Vibrio parahaemolyticus RIMD 2210633

44.944

88.119

0.396
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

80.198

0.386

Multiple sequence alignment