Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3W54_RS06545 Genome accession   NZ_LS999833
Coordinates   1263143..1263655 (-) Length   170 a.a.
NCBI ID   WP_162653588.1    Uniprot ID   -
Organism   Lentilitoribacter sp. Alg239-R112     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1258143..1268655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3W54_RS06525 coaD 1258491..1258991 (-) 501 WP_162652293.1 pantetheine-phosphate adenylyltransferase -
  G3W54_RS06530 gyrA 1259045..1261846 (-) 2802 WP_162652294.1 DNA gyrase subunit A -
  G3W54_RS06535 - 1262031..1262660 (+) 630 WP_162652295.1 MarC family protein -
  G3W54_RS06540 - 1262674..1263036 (-) 363 WP_162653587.1 hypothetical protein -
  G3W54_RS06545 ssb 1263143..1263655 (-) 513 WP_162653588.1 single-stranded DNA-binding protein Machinery gene
  G3W54_RS06550 uvrA 1263940..1266837 (+) 2898 WP_162652296.1 excinuclease ABC subunit UvrA -
  G3W54_RS06555 - 1266880..1267326 (+) 447 WP_162652297.1 VOC family protein -
  G3W54_RS06560 - 1267652..1267990 (+) 339 WP_162652298.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18091.68 Da        Isoelectric Point: 4.9556

>NTDB_id=1143543 G3W54_RS06545 WP_162653588.1 1263143..1263655(-) (ssb) [Lentilitoribacter sp. Alg239-R112]
MAGSVNKVILVGNLGADPDVKRTQDGRPIVNLSIATSESWRDKNTGERRDKTEWHRVVIFSEGLCRVAENYLKKGSKVYL
EGALQTRKWQDQNGQDKYSTEVVLQGFNSTLTMLDGRNDNQGGGGNFGSNQGGGNFGGSQGSGNQGGGNIPGGSGDSGGF
SNDMDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1143543 G3W54_RS06545 WP_162653588.1 1263143..1263655(-) (ssb) [Lentilitoribacter sp. Alg239-R112]
ATGGCGGGCAGTGTGAATAAAGTTATTTTGGTTGGCAATCTTGGTGCTGATCCAGATGTAAAGCGCACACAAGATGGTCG
TCCGATTGTTAATCTTTCAATCGCGACATCGGAAAGCTGGCGTGATAAAAATACAGGCGAGCGTCGAGATAAGACAGAAT
GGCACCGTGTTGTGATCTTTTCTGAGGGTCTATGCCGTGTTGCGGAAAACTATTTGAAAAAGGGCTCGAAAGTTTATCTT
GAGGGCGCGTTGCAAACACGCAAATGGCAAGATCAAAACGGGCAAGATAAATATTCGACGGAAGTCGTGCTACAGGGTTT
TAACTCGACTTTGACAATGCTTGATGGCCGGAACGACAACCAAGGTGGCGGAGGTAACTTTGGTAGCAACCAAGGTGGAG
GCAACTTTGGTGGAAGTCAGGGTAGCGGTAACCAAGGTGGTGGAAATATTCCTGGTGGTTCCGGTGATTCTGGCGGCTTT
TCTAATGATATGGACGATGATATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.526

100

0.565
  ssb Vibrio cholerae strain A1552

51.124

100

0.535
  ssb Neisseria meningitidis MC58

36.464

100

0.388
  ssb Neisseria gonorrhoeae MS11

36.313

100

0.382
  ssb Latilactobacillus sakei subsp. sakei 23K

34.254

100

0.365

Multiple sequence alignment