Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PPRCHA0_RS30570 Genome accession   NZ_LS999205
Coordinates   6634194..6635687 (+) Length   497 a.a.
NCBI ID   WP_011064193.1    Uniprot ID   A0A2C9EVM9
Organism   Pseudomonas protegens CHA0     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6629194..6640687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPRCHA0_RS30540 (PPRCHA0_5923) - 6629729..6630433 (+) 705 WP_015637455.1 HAD family hydrolase -
  PPRCHA0_RS30545 (PPRCHA0_5924) sutA 6630560..6630883 (-) 324 WP_007926654.1 transcriptional regulator SutA -
  PPRCHA0_RS30550 (PPRCHA0_5925) - 6630986..6631411 (-) 426 WP_011064190.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PPRCHA0_RS30555 (PPRCHA0_5926) - 6631621..6632958 (-) 1338 WP_011064191.1 ammonium transporter -
  PPRCHA0_RS30560 (PPRCHA0_5927) glnK 6632992..6633330 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  PPRCHA0_RS30565 (PPRCHA0_5928) - 6633747..6634007 (+) 261 WP_015637456.1 accessory factor UbiK family protein -
  PPRCHA0_RS30570 (PPRCHA0_5929) comM 6634194..6635687 (+) 1494 WP_011064193.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PPRCHA0_RS30575 (PPRCHA0_5930) - 6635692..6636906 (-) 1215 WP_015637457.1 aldose 1-epimerase family protein -
  PPRCHA0_RS30580 (PPRCHA0_5931) - 6637019..6637597 (-) 579 WP_015637458.1 TetR/AcrR family transcriptional regulator -
  PPRCHA0_RS30585 (PPRCHA0_5932) - 6637711..6638637 (+) 927 WP_015637459.1 ABC transporter six-transmembrane domain-containing protein -
  PPRCHA0_RS30590 (PPRCHA0_5933) - 6638641..6639609 (-) 969 WP_015637460.1 Ca2+-dependent phosphoinositide-specific phospholipase C -
  PPRCHA0_RS32370 - 6639729..6640589 (-) 861 WP_370059457.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53102.08 Da        Isoelectric Point: 8.0997

>NTDB_id=1143444 PPRCHA0_RS30570 WP_011064193.1 6634194..6635687(+) (comM) [Pseudomonas protegens CHA0]
MSLAIIHSRAQVGVQAPAVSVEVHLANGLPSLTLVGLPEAAVKESKDRVRSAILNAGFNFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALALDNIECLGELALSGAVRPVRGVLPAALAARDAGHTLLVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHAPIAPYVSDGLVQSHFPYPDLSEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLQE
DEALEVAAIQSVASHKPLRYWPQRPFRQPHHSASGAALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIVIARARDRVQFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREATALNPEPQP
GNDSAAAATRVAGARELQRERQGCANAFLDLPGLRRHCKLSTTDERWLEAACERLGLSLRAAHRLLKVARTLADLEQAAR
ISREHLAEALHYRPSAD

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1143444 PPRCHA0_RS30570 WP_011064193.1 6634194..6635687(+) (comM) [Pseudomonas protegens CHA0]
ATGTCCCTGGCAATCATCCACAGCCGTGCCCAGGTCGGCGTCCAGGCTCCGGCTGTCAGTGTTGAAGTGCACCTGGCCAA
CGGCTTGCCGAGCCTGACCCTGGTGGGCCTGCCGGAAGCCGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGTGCAATCC
TCAATGCCGGGTTCAACTTTCCGGCCCGGCGCATCACCCTCAACCTGGCGCCGGCGGACCTGCCCAAGGACGGCGGGCGC
TTCGATCTGGCCATCGCCCTGGGCATCCTTGCCGCCAGCGTGCAGGTGCCGGCCCTGGCCCTGGACAACATCGAATGCCT
GGGGGAGCTGGCACTCTCCGGCGCGGTGCGCCCGGTACGCGGCGTACTGCCCGCCGCACTGGCGGCACGCGACGCCGGGC
ATACCCTGCTGGTGCCCCGGGCCAATGCCGAAGAAGCCTGCCTGGCCAGCGGCCTAAAGGTGATCGCGGTGGATCATCTG
CTGGAGGCCGTTGCCCATTTCAACGGCCACGCGCCGATTGCGCCCTATGTCAGCGACGGCCTGGTGCAGAGCCACTTCCC
CTACCCCGATCTCAGCGAAGTGCAAGGCCAGCTCGCCGCCAAGCGCGCCCTGCTGATCGCCGCGGCGGGCGCCCACAACC
TGTTGTTCAGCGGCCCGCCAGGCACCGGCAAGACCCTGTTGGCCAGCCGCTTGCCCGGCCTGCTGCCACCGCTGCAGGAA
GATGAAGCCCTGGAAGTCGCGGCGATCCAGTCGGTGGCCAGCCACAAGCCCCTGCGCTACTGGCCACAGCGGCCGTTTCG
CCAGCCCCACCATTCGGCTTCGGGTGCGGCACTGGTCGGAGGCGGCTCGAAACCCCAGCCTGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAACTGCCGGAGTTCGACCGCAAGGTCCTGGAAGTGCTGCGCGAGCCCATGGAGTCC
GGGCAGATCGTCATTGCCCGAGCCCGGGACCGGGTGCAGTTCCCGGCACGCTTCCAATTGGTGGCAGCGATGAACCCCTG
CCCCTGTGGATATCTTGGCGAGCCCAGCGGACGCTGCCGTTGCACACCGGAGCAGATCCAGCGCTATCGCAACAAGTTAT
CCGGGCCGCTGCTGGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAAGCCACCGCCCTCAACCCCGAGCCGCAACCG
GGCAATGACAGCGCCGCAGCCGCCACCAGGGTCGCCGGGGCCCGCGAGCTGCAACGCGAGCGCCAGGGCTGCGCCAACGC
CTTTCTCGACCTGCCCGGCCTGCGTCGCCACTGCAAATTATCCACAACCGACGAGCGCTGGCTGGAAGCGGCCTGCGAAC
GCCTGGGCCTGTCGTTGCGGGCCGCTCACCGTTTGCTCAAGGTGGCGCGTACCCTGGCGGACCTGGAACAGGCCGCGCGA
ATCAGCCGCGAGCACCTGGCCGAAGCCCTGCATTACCGGCCCAGCGCCGATTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C9EVM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.556

99.598

0.553
  comM Vibrio cholerae strain A1552

55.354

99.598

0.551
  comM Glaesserella parasuis strain SC1401

54.8

100

0.551
  comM Haemophilus influenzae Rd KW20

54.491

100

0.549
  comM Legionella pneumophila str. Paris

50.198

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.198

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.328

100

0.459

Multiple sequence alignment