Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D5R51_RS11610 Genome accession   NZ_LS997867
Coordinates   2509117..2509650 (-) Length   177 a.a.
NCBI ID   WP_000168286.1    Uniprot ID   A0AAX1QXG6
Organism   Vibrio paracholerae strain NCTC 30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2504117..2514650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R51_RS11590 (SAMEA104470976_02312) - 2504573..2504890 (-) 318 WP_000252817.1 hypothetical protein -
  D5R51_RS11595 (SAMEA104470976_02313) gspM 2504883..2505533 (-) 651 WP_029627862.1 type II secretion system protein GspM -
  D5R51_RS11600 (SAMEA104470976_02314) - 2505530..2506969 (-) 1440 WP_119091542.1 PilN domain-containing protein -
  D5R51_RS11605 (SAMEA104470976_02316) csrD 2506982..2508939 (-) 1958 Protein_2191 RNase E specificity factor CsrD -
  D5R51_RS11610 (SAMEA104470976_02317) ssb 2509117..2509650 (-) 534 WP_000168286.1 single-stranded DNA-binding protein Machinery gene
  D5R51_RS11615 (SAMEA104470976_02318) qstR 2509942..2510586 (+) 645 WP_001188313.1 LuxR C-terminal-related transcriptional regulator Regulator
  D5R51_RS11620 (SAMEA104470976_02319) galU 2510758..2511630 (+) 873 WP_162892021.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  D5R51_RS11625 (SAMEA104470976_02320) uvrA 2511785..2514607 (+) 2823 WP_119091544.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19758.95 Da        Isoelectric Point: 5.7570

>NTDB_id=1143357 D5R51_RS11610 WP_000168286.1 2509117..2509650(-) (ssb) [Vibrio paracholerae strain NCTC 30]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYSTDIVVQGYNGIMQMLGGRTQQGGMPAQGGMNAPAQQSNWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1143357 D5R51_RS11610 WP_000168286.1 2509117..2509650(-) (ssb) [Vibrio paracholerae strain NCTC 30]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCTGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACTG
AATGGCACCGTGTGACTTTGTATGGAAAATTGGCTGAAGTTGCAGGTGAGTACTTGCGTAAAGGCTCTCAAGTCTACATT
GAAGGGCAGCTACAGACTCGCAAGTGGCAAGATCAAAATGGACAAGATCGTTATTCTACCGATATTGTCGTGCAAGGATA
CAATGGCATTATGCAGATGCTAGGTGGTCGCACACAACAAGGTGGAATGCCTGCTCAAGGCGGTATGAATGCTCCAGCAC
AGCAAAGTAACTGGGGACAACCGCAACAACCAGCGAAGCAGCATCAACCTATGCAACAATCAGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

96.045

100

0.96
  ssb Glaesserella parasuis strain SC1401

51.323

100

0.548
  ssb Neisseria meningitidis MC58

49.444

100

0.503
  ssb Neisseria gonorrhoeae MS11

49.444

100

0.503

Multiple sequence alignment