Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | D5R51_RS11615 | Genome accession | NZ_LS997867 |
| Coordinates | 2509942..2510586 (+) | Length | 214 a.a. |
| NCBI ID | WP_001188313.1 | Uniprot ID | A0AAX1QXG0 |
| Organism | Vibrio paracholerae strain NCTC 30 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2504942..2515586
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5R51_RS11600 (SAMEA104470976_02314) | - | 2505530..2506969 (-) | 1440 | WP_119091542.1 | PilN domain-containing protein | - |
| D5R51_RS11605 (SAMEA104470976_02316) | csrD | 2506982..2508939 (-) | 1958 | Protein_2191 | RNase E specificity factor CsrD | - |
| D5R51_RS11610 (SAMEA104470976_02317) | ssb | 2509117..2509650 (-) | 534 | WP_000168286.1 | single-stranded DNA-binding protein | Machinery gene |
| D5R51_RS11615 (SAMEA104470976_02318) | qstR | 2509942..2510586 (+) | 645 | WP_001188313.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| D5R51_RS11620 (SAMEA104470976_02319) | galU | 2510758..2511630 (+) | 873 | WP_162892021.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| D5R51_RS11625 (SAMEA104470976_02320) | uvrA | 2511785..2514607 (+) | 2823 | WP_119091544.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 214 a.a. Molecular weight: 24748.63 Da Isoelectric Point: 9.6461
>NTDB_id=1143358 D5R51_RS11615 WP_001188313.1 2509942..2510586(+) (qstR) [Vibrio paracholerae strain NCTC 30]
MQRANYARTIYLLTTQPKALHPSAQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENVLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDIGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL
MQRANYARTIYLLTTQPKALHPSAQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENVLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDIGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL
Nucleotide
Download Length: 645 bp
>NTDB_id=1143358 D5R51_RS11615 WP_001188313.1 2509942..2510586(+) (qstR) [Vibrio paracholerae strain NCTC 30]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACAACACAACCGAAGGCTTTACATCCCAGTGCTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCTGTGATTGAGCCAGAACGCTTATTACGGGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGTCCTTATACGCCAGCAATTAGGCCCCCTTAAGCTTACCAGCCCCTACTTCGAA
ACTATTTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGAAATCTCAAGGGTTTGTTTTACGC
CAATGAAGATATTGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTTAGTA
GCCAATTACTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACGGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGTGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACAACACAACCGAAGGCTTTACATCCCAGTGCTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCTGTGATTGAGCCAGAACGCTTATTACGGGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGTCCTTATACGCCAGCAATTAGGCCCCCTTAAGCTTACCAGCCCCTACTTCGAA
ACTATTTTGTTTAATGTCGAGAAACGGTTAAGAACGGAAGATCTGCTCACTTTTGGAAATCTCAAGGGTTTGTTTTACGC
CAATGAAGATATTGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTTAGTA
GCCAATTACTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACGGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGTGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio cholerae strain A1552 |
98.598 |
100 |
0.986 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
52.093 |
100 |
0.523 |
| qstR | Vibrio campbellii strain DS40M4 |
52.336 |
100 |
0.523 |