Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DQL17_RS08405 Genome accession   NZ_LS483496
Coordinates   1701063..1702592 (+) Length   509 a.a.
NCBI ID   WP_111689147.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8455     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1696063..1707592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL17_RS08380 (NCTC8455_01673) oppC 1696409..1697344 (+) 936 WP_005661282.1 oligopeptide ABC transporter permease OppC -
  DQL17_RS08385 (NCTC8455_01674) - 1697354..1698325 (+) 972 WP_050948565.1 ABC transporter ATP-binding protein -
  DQL17_RS08390 (NCTC8455_01675) oppF 1698322..1699320 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  DQL17_RS08395 (NCTC8455_01676) - 1699360..1700226 (-) 867 WP_172452363.1 VirK/YbjX family protein -
  DQL17_RS08400 (NCTC8455_01677) yihA 1700331..1700948 (+) 618 WP_111689146.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  DQL17_RS08405 (NCTC8455_01678) comM 1701063..1702592 (+) 1530 WP_111689147.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DQL17_RS08410 (NCTC8455_01679) deoC 1702626..1703297 (-) 672 WP_111689148.1 deoxyribose-phosphate aldolase -
  DQL17_RS08415 (NCTC8455_01680) - 1703407..1703910 (+) 504 WP_050948571.1 protein disulfide oxidoreductase -
  DQL17_RS08420 (NCTC8455_01681) rfaD 1703963..1704889 (+) 927 WP_050848338.1 ADP-glyceromanno-heptose 6-epimerase -
  DQL17_RS08425 (NCTC8455_01682) xylB 1704940..1706421 (-) 1482 WP_050948572.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 56005.57 Da        Isoelectric Point: 9.9440

>NTDB_id=1142735 DQL17_RS08405 WP_111689147.1 1701063..1702592(+) (comM) [Haemophilus influenzae strain NCTC8455]
MSLAIVYSRTSMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNAQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTLPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVRKKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
EEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1142735 DQL17_RS08405 WP_111689147.1 1701063..1702592(+) (comM) [Haemophilus influenzae strain NCTC8455]
ATGTCTCTTGCTATTGTTTACAGCCGTACCTCTATGGGGGTGCAAGCACCACTTGTCACTATTGAGGTGCATTTAAGCAA
CGGAAAACCCGGATTTACACTTGTTGGTTTGCCCGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCATTGA
TGAATGCACAATTTAAATACCCAGCCAAACGCATTACCGTGAATCTCGCACCAGCAGATTTACCGAAAGAAGGTGGACGA
TTTGATTTGCCTATTGCCATCGGAATTTTAGCCGCATCGGATCAGCTTGATGCGAGCCGCTTAAAGCAATTTGAATTTGT
GGCAGAGCTTGCGCTTACTGGGCAATTGCGTGGCGTTCACGGCGTAATTCCCGCTATTCTTGCAGCACAAAAGTCAAAGC
GAGAATTAATTATCGCAAAGCAAAATGCCAATGAAGCCTCGCTTGTTTCTGATCAAAATACTTATTTTGCGCAAACACTT
TTAGACGTAGTGCAATTTCTCAATGCTCAAGAAAAATTACCTCTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCGGGTAAAAATACATTAGATTTAACGGATATTATCGGACAACAGCATGCCAAACGAGCATTGACCATTGCCGCAGCAG
GGCAGCATAATTTACTCTTTCTTGGCCCTCCAGGCACAGGGAAAACGATGTTAGCTAGCCGATTAACAGGGCTTTTACCT
GAAATGACAGATTTAGAAGCGATTGAAACGGCATCTGTAACGAGTTTAGTGCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCCCCGCACCATAGTGCATCAATGCCTGCTTTAGTTGGTGGTGGGACGCTCCCTAAACCTGGTG
AAATATCCTTAGCAACAAATGGCGTATTGTTTCTTGATGAACTTCCAGAGTTTGAACGGAAAGTATTGGATGCACTACGT
CAGCCTTTGGAAAGTGGCGAGATTATTATTTCTCGTGCCAATGCCAAAATTCAATTTCCAGCTCGTTTTCAATTAGTCGC
AGCAATGAATCCAAGCCCCACAGGTCATTATACTGGAACACATAACCGCACTTCGCCGCAACAAATTATGCGTTATTTAA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTATTGCCACAAGGTAGCTTACAAAAT
ACGGGCGATCGTGGCGAAACCAGCGCACAAGTTCGTAAAAAAGTGTTAAAAGTGCGAGAGATTCAAATGGAAAGAGCGGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAACGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTTGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTATCTCGAACCATTGCCGATCTACAA
GAAGAACAACAAATTTCTCAACCGCACTTAGCGGAAGCCTTGGGCTATCGAGCAATGGATCGTTTGTTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

98.428

100

0.984
  comM Glaesserella parasuis strain SC1401

78.698

99.607

0.784
  comM Vibrio cholerae strain A1552

66.667

99.607

0.664
  comM Vibrio campbellii strain DS40M4

65.286

99.607

0.65
  comM Legionella pneumophila str. Paris

50.895

98.821

0.503
  comM Legionella pneumophila strain ERS1305867

50.895

98.821

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.796

100

0.473

Multiple sequence alignment