Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   DQL18_RS09680 Genome accession   NZ_LS483486
Coordinates   1899111..1899458 (-) Length   115 a.a.
NCBI ID   WP_032824559.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC12194     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1894111..1904458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL18_RS09660 (NCTC12194_01944) bioB 1894500..1895501 (-) 1002 WP_005655985.1 biotin synthase BioB -
  DQL18_RS09665 (NCTC12194_01945) thiQ 1895614..1896261 (-) 648 WP_005647864.1 thiamine ABC transporter ATP-binding protein -
  DQL18_RS09670 (NCTC12194_01946) thiP 1896245..1897861 (-) 1617 WP_105905398.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  DQL18_RS09675 (NCTC12194_01947) thiB 1897866..1898864 (-) 999 WP_005686289.1 thiamine ABC transporter substrate binding subunit -
  DQL18_RS09680 (NCTC12194_01949) comE1/comEA 1899111..1899458 (-) 348 WP_032824559.1 helix-hairpin-helix domain-containing protein Machinery gene
  DQL18_RS09685 (NCTC12194_01950) ispH 1899627..1900571 (-) 945 WP_105905399.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DQL18_RS09690 (NCTC12194_01951) lspA 1900568..1901083 (-) 516 WP_005664259.1 signal peptidase II -
  DQL18_RS09695 (NCTC12194_01952) - 1901153..1902712 (-) 1560 WP_040035156.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12361.26 Da        Isoelectric Point: 8.0085

>NTDB_id=1142639 DQL18_RS09680 WP_032824559.1 1899111..1899458(-) (comE1/comEA) [Haemophilus influenzae strain NCTC12194]
MKLMKTLFTLVVLCGALVVSSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1142639 DQL18_RS09680 WP_032824559.1 1899111..1899458(-) (comE1/comEA) [Haemophilus influenzae strain NCTC12194]
ATGAAATTAATGAAAACATTATTCACTTTGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATACCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

95.536

97.391

0.93
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383
  comEA Acinetobacter baylyi ADP1

35.833

100

0.374
  comEA Acinetobacter baumannii strain A118

32.061

100

0.365

Multiple sequence alignment