Detailed information NTG0114236

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPOKI673_RS07495
• Genome accession: NZ_CP006825
• Coordinates: 1556711..1557673 (-)
• Length: 320 a.a.
• NCBI ID: WP_025314238.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki673
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1551711..1562673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI673_RS07475 (HPOKI673_07800)	-	1552002..1552934 (-)	933	WP_025314234.1	GDP-L-fucose synthase family protein	-
HPOKI673_RS07480 (HPOKI673_07805)	gmd	1552927..1554072 (-)	1146	WP_025314235.1	GDP-mannose 4,6-dehydratase	-
HPOKI673_RS07485 (HPOKI673_07810)	-	1554100..1555512 (-)	1413	WP_025314236.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOKI673_RS07490 (HPOKI673_07815)	comB10	1555582..1556718 (-)	1137	WP_025314237.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI673_RS07495 (HPOKI673_07820)	comB9	1556711..1557673 (-)	963	WP_025314238.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI673_RS07500 (HPOKI673_07825)	comB8	1557673..1558416 (-)	744	WP_025314239.1	type IV secretion system protein	Machinery gene
HPOKI673_RS07505 (HPOKI673_07830)	comB7	1558413..1558526 (-)	114	WP_001217868.1	hypothetical protein	Machinery gene
HPOKI673_RS07510 (HPOKI673_07835)	comB6	1558542..1559597 (-)	1056	WP_025314240.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI673_RS07515 (HPOKI673_07840)	-	1559605..1560600 (-)	996	WP_025314241.1	PDZ domain-containing protein	-
HPOKI673_RS07520 (HPOKI673_07845)	-	1560600..1560893 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI673_RS07525 (HPOKI673_07850)	panD	1560904..1561254 (-)	351	WP_025314242.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36831.40 Da
• Isoelectric Point: 9.2072

>NTDB_id=114236 HPOKI673_RS07495 WP_025314238.1 1556711..1557673(-) (comB9) [Helicobacter pylori oki673]
MRKVLYALVGFLLVFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLENAPTNNKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=114236 HPOKI673_RS07495 WP_025314238.1 1556711..1557673(-) (comB9) [Helicobacter pylori oki673]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCCACGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCTATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAGCCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAATTCAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAGCACGAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGATTTATAAAGTTGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTATATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.638	100	0.944