Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPOKI673_RS07500 Genome accession   NZ_CP006825
Coordinates   1557673..1558416 (-) Length   247 a.a.
NCBI ID   WP_025314239.1    Uniprot ID   -
Organism   Helicobacter pylori oki673     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1552673..1563416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI673_RS07480 (HPOKI673_07805) gmd 1552927..1554072 (-) 1146 WP_025314235.1 GDP-mannose 4,6-dehydratase -
  HPOKI673_RS07485 (HPOKI673_07810) - 1554100..1555512 (-) 1413 WP_025314236.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPOKI673_RS07490 (HPOKI673_07815) comB10 1555582..1556718 (-) 1137 WP_025314237.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPOKI673_RS07495 (HPOKI673_07820) comB9 1556711..1557673 (-) 963 WP_025314238.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPOKI673_RS07500 (HPOKI673_07825) comB8 1557673..1558416 (-) 744 WP_025314239.1 type IV secretion system protein Machinery gene
  HPOKI673_RS07505 (HPOKI673_07830) comB7 1558413..1558526 (-) 114 WP_001217868.1 hypothetical protein Machinery gene
  HPOKI673_RS07510 (HPOKI673_07835) comB6 1558542..1559597 (-) 1056 WP_025314240.1 P-type conjugative transfer protein TrbL Machinery gene
  HPOKI673_RS07515 (HPOKI673_07840) - 1559605..1560600 (-) 996 WP_025314241.1 PDZ domain-containing protein -
  HPOKI673_RS07520 (HPOKI673_07845) - 1560600..1560893 (-) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  HPOKI673_RS07525 (HPOKI673_07850) panD 1560904..1561254 (-) 351 WP_025314242.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28582.78 Da        Isoelectric Point: 9.0134

>NTDB_id=114237 HPOKI673_RS07500 WP_025314239.1 1557673..1558416(-) (comB8) [Helicobacter pylori oki673]
MKEKPFNSEQLAFLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIFQQDNNPIASVSIAAKLMNENKLVYEKRYKIALSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=114237 HPOKI673_RS07500 WP_025314239.1 1557673..1558416(-) (comB8) [Helicobacter pylori oki673]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGGCTTTTTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCTAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAATCGCATTGACGATAAATCACGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAGCGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTTTCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGCGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

95.547

100

0.955

Multiple sequence alignment