Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HPOKI673_RS07490 Genome accession   NZ_CP006825
Coordinates   1555582..1556718 (-) Length   378 a.a.
NCBI ID   WP_025314237.1    Uniprot ID   -
Organism   Helicobacter pylori oki673     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1550582..1561718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI673_RS07470 (HPOKI673_07790) hypE 1550759..1551757 (+) 999 WP_025314233.1 hydrogenase expression/formation protein HypE -
  HPOKI673_RS07475 (HPOKI673_07800) - 1552002..1552934 (-) 933 WP_025314234.1 GDP-L-fucose synthase family protein -
  HPOKI673_RS07480 (HPOKI673_07805) gmd 1552927..1554072 (-) 1146 WP_025314235.1 GDP-mannose 4,6-dehydratase -
  HPOKI673_RS07485 (HPOKI673_07810) - 1554100..1555512 (-) 1413 WP_025314236.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPOKI673_RS07490 (HPOKI673_07815) comB10 1555582..1556718 (-) 1137 WP_025314237.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPOKI673_RS07495 (HPOKI673_07820) comB9 1556711..1557673 (-) 963 WP_025314238.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPOKI673_RS07500 (HPOKI673_07825) comB8 1557673..1558416 (-) 744 WP_025314239.1 type IV secretion system protein Machinery gene
  HPOKI673_RS07505 (HPOKI673_07830) comB7 1558413..1558526 (-) 114 WP_001217868.1 hypothetical protein Machinery gene
  HPOKI673_RS07510 (HPOKI673_07835) comB6 1558542..1559597 (-) 1056 WP_025314240.1 P-type conjugative transfer protein TrbL Machinery gene
  HPOKI673_RS07515 (HPOKI673_07840) - 1559605..1560600 (-) 996 WP_025314241.1 PDZ domain-containing protein -
  HPOKI673_RS07520 (HPOKI673_07845) - 1560600..1560893 (-) 294 WP_000347923.1 YbaB/EbfC family nucleoid-associated protein -
  HPOKI673_RS07525 (HPOKI673_07850) panD 1560904..1561254 (-) 351 WP_025314242.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42125.72 Da        Isoelectric Point: 9.9401

>NTDB_id=114235 HPOKI673_RS07490 WP_025314237.1 1555582..1556718(-) (comB10) [Helicobacter pylori oki673]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQQNLLNDDEVKYPLQDYTFTQNPQPTHTESSKDATIKALQEQLKA
ALKALNSQGMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVIIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=114235 HPOKI673_RS07490 WP_025314237.1 1555582..1556718(-) (comB10) [Helicobacter pylori oki673]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACAAAACCTTTTGAATGACGATGAGGTGAAATACCCCCTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTCACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCCAAGGAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCCTTTAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGACAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGAAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGGGCTACTAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTCAT
CATTAGAGAAGGGAGCAGAGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCTAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

95.503

100

0.955

Multiple sequence alignment