Detailed information NTG0114239

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPOKI673_RS07510
• Genome accession: NZ_CP006825
• Coordinates: 1558542..1559597 (-)
• Length: 351 a.a.
• NCBI ID: WP_025314240.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki673
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1553542..1564597

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI673_RS07485 (HPOKI673_07810)	-	1554100..1555512 (-)	1413	WP_025314236.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOKI673_RS07490 (HPOKI673_07815)	comB10	1555582..1556718 (-)	1137	WP_025314237.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI673_RS07495 (HPOKI673_07820)	comB9	1556711..1557673 (-)	963	WP_025314238.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI673_RS07500 (HPOKI673_07825)	comB8	1557673..1558416 (-)	744	WP_025314239.1	type IV secretion system protein	Machinery gene
HPOKI673_RS07505 (HPOKI673_07830)	comB7	1558413..1558526 (-)	114	WP_001217868.1	hypothetical protein	Machinery gene
HPOKI673_RS07510 (HPOKI673_07835)	comB6	1558542..1559597 (-)	1056	WP_025314240.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI673_RS07515 (HPOKI673_07840)	-	1559605..1560600 (-)	996	WP_025314241.1	PDZ domain-containing protein	-
HPOKI673_RS07520 (HPOKI673_07845)	-	1560600..1560893 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI673_RS07525 (HPOKI673_07850)	panD	1560904..1561254 (-)	351	WP_025314242.1	aspartate 1-decarboxylase	-
HPOKI673_RS07530 (HPOKI673_07855)	-	1561244..1563469 (-)	2226	WP_025314243.1	AAA family ATPase	-
HPOKI673_RS07535 (HPOKI673_07860)	-	1563469..1563744 (-)	276	WP_025314244.1	ATP-dependent Clp protease adaptor ClpS	-
HPOKI673_RS07540 (HPOKI673_07865)	-	1563752..1564165 (-)	414	WP_001023008.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39925.90 Da
• Isoelectric Point: 8.8165

>NTDB_id=114239 HPOKI673_RS07510 WP_025314240.1 1558542..1559597(-) (comB6) [Helicobacter pylori oki673]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGIFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVLTCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=114239 HPOKI673_RS07510 WP_025314240.1 1558542..1559597(-) (comB6) [Helicobacter pylori oki673]
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACACCTCTCACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTTTTAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTCTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGATTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGAAGCGTTGTGCTTACATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96